Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0374
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   0.59 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.4  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   5.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.3  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 254 NEILRTERDFTWRRRGCRQFCIFRSIRPVSDD 349
           + +L  E +   R+RGC + C+F  +  ++D+
Sbjct: 39  DSLLEDESERMLRKRGCIEACLFHRLALMNDN 70


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 234 RRLYCGKMKSYEQNETLLGDGVGVANFV 317
           RR+ C  +  Y  +  ++  GVGV+NF+
Sbjct: 213 RRINCTYVALYPSSVQVIALGVGVSNFL 240


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 411 PYIPPDESEQDLDTKYFGAYNNRRE 485
           P + P + E  LD    G Y+NR +
Sbjct: 45  PPVTPPQGENMLDMDLRGIYSNRTD 69


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 7   DYYT*LSIKRCIATIRYTLCTIFFSKFSLGHC 102
           D++  LS     ATI       +F+K+  G C
Sbjct: 277 DFFVFLSFAFIFATIIQFAVVHYFTKYGSGEC 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,522
Number of Sequences: 438
Number of extensions: 5320
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)