Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0374
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26800.3 68415.m03216 hydroxymethylglutaryl-CoA lyase, putati...    30   2.0  
At2g26800.2 68415.m03215 hydroxymethylglutaryl-CoA lyase, putati...    30   2.0  
At2g26800.1 68415.m03214 hydroxymethylglutaryl-CoA lyase, putati...    30   2.0  
At3g53540.1 68416.m05912 expressed protein                             29   3.4  
At4g04130.1 68417.m00583 Ulp1 protease family protein contains P...    29   4.5  
At2g17590.1 68415.m02035 DC1 domain-containing protein contains ...    29   4.5  
At1g59630.1 68414.m06706 F-box family protein-related contains w...    29   4.5  
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g...    28   6.0  
At3g63500.2 68416.m07153 expressed protein                             28   6.0  
At3g63500.1 68416.m07152 expressed protein                             28   6.0  

>At2g26800.3 68415.m03216 hydroxymethylglutaryl-CoA lyase, putative
           / 3-hydroxy-3-methylglutarate-CoA lyase, putative /
           HMG-CoA lyase, putative similar to SP|P35915
           Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA
           lyase) {Gallus gallus}; contains Pfam profile PF00682:
           HMGL-like
          Length = 355

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 306 RHPRRLQVKSRSVRRISFCHNTTFATGDLIEAIKISKRRHCTF 178
           RH R+L       R ISF   T+  +G L E+    ++++ TF
Sbjct: 105 RHTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTF 147


>At2g26800.2 68415.m03215 hydroxymethylglutaryl-CoA lyase, putative
           / 3-hydroxy-3-methylglutarate-CoA lyase, putative /
           HMG-CoA lyase, putative similar to SP|P35915
           Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA
           lyase) {Gallus gallus}; contains Pfam profile PF00682:
           HMGL-like
          Length = 468

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 306 RHPRRLQVKSRSVRRISFCHNTTFATGDLIEAIKISKRRHCTF 178
           RH R+L       R ISF   T+  +G L E+    ++++ TF
Sbjct: 105 RHTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTF 147


>At2g26800.1 68415.m03214 hydroxymethylglutaryl-CoA lyase, putative
           / 3-hydroxy-3-methylglutarate-CoA lyase, putative /
           HMG-CoA lyase, putative similar to SP|P35915
           Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA
           lyase) {Gallus gallus}; contains Pfam profile PF00682:
           HMGL-like
          Length = 433

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 306 RHPRRLQVKSRSVRRISFCHNTTFATGDLIEAIKISKRRHCTF 178
           RH R+L       R ISF   T+  +G L E+    ++++ TF
Sbjct: 70  RHTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTF 112


>At3g53540.1 68416.m05912 expressed protein
          Length = 924

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +1

Query: 82  KFSLGHCELLALMKEDF------KNVLQASVQKQWDEVKRAMSAFTYFDGLD 219
           +F+  HCE L+  K+DF      K++L   + KQ +  KR+ S      GLD
Sbjct: 42  EFNSCHCEALSENKQDFPTGVPMKSLLAQEMSKQKESKKRSPSIIARLMGLD 93


>At4g04130.1 68417.m00583 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At2g11345,  At3g42690
          Length = 1200

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +2

Query: 515 RKSIERKRTESILKNSSLSKQSKHSEGNKGESVQ--ISVDGPEIIELSASTAAVPSTQEN 688
           ++ + RKR    +  +SLS  S  S  N G +V   I VDG   + L  S          
Sbjct: 581 KQPVTRKRKREEV--TSLSSGSSSSGLNHGPAVDTDIGVDGGGTVNLEGSVDPWELYGST 638

Query: 689 RVLLDPTEQGRNSHRMSVIPEAIVD 763
           + + +P E GR S   S +P A  D
Sbjct: 639 KNISEPQEMGRES-PTSPVPTATQD 662


>At2g17590.1 68415.m02035 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 632

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 596 YPPNVCFASTNWNFLVYSLSFSVLC 522
           +PP+ CFAS++  F+ +SL F   C
Sbjct: 49  HPPSGCFASSDSTFIRHSLYFYFFC 73


>At1g59630.1 68414.m06706 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain; similar to  F-box protein family, AtFBX9
           (GI:20197985) [Arabidopsis thaliana] contains weak hit
           to TIGRFAM TIGR01640 : F-box protein interaction domain;
          Length = 239

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +2

Query: 122 KKILRMYCKLPCKNSGTKSNVQCL------RLLILMASMRSPVAKVVLWQNEI 262
           K++++++C LPCK + + SN + L      R  +L  S R+    + + + EI
Sbjct: 96  KEVIKIFCILPCKANKSTSNTRILSIYKGDRFSVLQQSKRTGEINIWVTEKEI 148


>At4g04970.1 68417.m00722 callose synthase, putative /
           1,3-beta-glucan synthase, putative similar to callose
           synthase 1 catalytic subunit GI:13649388 from
           [Arabidopsis thaliana]
          Length = 1768

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 388 VIFTVFMIHIYRQTRANKIWTQSILEPTITAEKVV 492
           V+F+VF   I+ Q   + +W+++  E  +T  KVV
Sbjct: 389 VLFSVFYARIWSQKNKDGVWSRAANERVVTFLKVV 423


>At3g63500.2 68416.m07153 expressed protein
          Length = 1162

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +2

Query: 572 KQSKHSEGNKGESVQISVDGPEIIELSASTAAVPSTQENRVLLDPTEQGRNSHRMSVIP 748
           ++ K  +GN G++ +  V+GPE +E +A     P+   + V      + ++  + S +P
Sbjct: 370 EELKEVKGNDGDANKAEVEGPECVEENALANRTPAEYISSVSDSSVHKCKDKGKNSDVP 428


>At3g63500.1 68416.m07152 expressed protein
          Length = 887

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +2

Query: 572 KQSKHSEGNKGESVQISVDGPEIIELSASTAAVPSTQENRVLLDPTEQGRNSHRMSVIP 748
           ++ K  +GN G++ +  V+GPE +E +A     P+   + V      + ++  + S +P
Sbjct: 95  EELKEVKGNDGDANKAEVEGPECVEENALANRTPAEYISSVSDSSVHKCKDKGKNSDVP 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,250,763
Number of Sequences: 28952
Number of extensions: 401438
Number of successful extensions: 1180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)