Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0372
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   6.1  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 652 EHHHSYFSIYKKVFQITVIRL 714
           +  HS++ IYK  + I  + L
Sbjct: 34  QERHSFYKIYKYTYNIVAVSL 54


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 442 YACKTSSASSIVGVIPYLPYSKHAKCGNEDV 534
           Y   ++  SS +    Y PYS + K G ED+
Sbjct: 128 YTVISNGYSSPMSSGSYDPYSPNGKIGREDL 158


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 539 NYTSSFPHFACLLYGKYGITPTIELAEE 456
           +Y + + H   +   +YG TP + L EE
Sbjct: 293 SYATKYCHSLKIHLRRYGHTPNVVLDEE 320


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,083
Number of Sequences: 336
Number of extensions: 4714
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)