Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0372
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    91   2e-19
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    87   3e-18
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    79   5e-16
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    28   1.7  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   3.9  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    26   5.1  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   8.9  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   8.9  

>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 43/87 (49%), Positives = 60/87 (68%)
 Frame = +1

Query: 256 PELADLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNIMELLI 435
           PEL  LI+NRLG+     S+    N ET VEI +S+R K+++I+Q+G+  VN+++MELLI
Sbjct: 13  PELLHLISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGSSTVNDSLMELLI 72

Query: 436 MAYACKTSSASSIVGVIPYLPYSKHAK 516
           +  ACK  SA  I  V+PY PYSK +K
Sbjct: 73  IISACKGGSAKRITAVMPYFPYSKQSK 99



 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 35/79 (44%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
 Frame = +3

Query: 513 KMRK-RGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQES 689
           KMRK R  I ++++A ++  +G+ HIIT+DLH  ++QGFF  PVDNL A P + ++I+ +
Sbjct: 99  KMRKYRDAITARMVANLLTVAGVDHIITLDLHASQMQGFFTRPVDNLYAEPNIAEWIRRN 158

Query: 690 IPDYRNSVIVARNPGSAKK 746
           + D+  +V+V++NPG AK+
Sbjct: 159 VDDWEEAVVVSKNPGGAKR 177


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 38/87 (43%), Positives = 61/87 (70%)
 Frame = +1

Query: 256 PELADLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNIMELLI 435
           PELA+ +A R+G+  G  +V   +NRET V I +S+R ++++I+QTG   +N+++MELLI
Sbjct: 15  PELAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTGCGSINDHLMELLI 74

Query: 436 MAYACKTSSASSIVGVIPYLPYSKHAK 516
           M  AC+++SA  I  +IP  PY++  K
Sbjct: 75  MINACRSASARRITAIIPCFPYARQDK 101



 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 39/80 (48%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
 Frame = +3

Query: 513 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQESI 692
           K + R  I ++L+A M+  +G +HIITMDLH  +IQGFF+ PVDNL A P +L+YI+E+I
Sbjct: 102 KDKSRAPITARLVANMLQTAGCNHIITMDLHASQIQGFFNVPVDNLYAEPSVLRYIRENI 161

Query: 693 PDYRN-SVIVARNPGSAKKS 749
               N +VIV+ + G AK++
Sbjct: 162 DTTVNPTVIVSPDAGGAKRA 181


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 36/68 (52%), Positives = 47/68 (69%)
 Frame = +3

Query: 546 LLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQESIPDYRNSVIVAR 725
           L+A ++  SG  HIITMDLH  + QGFFD PVDNL   P L  YI  +IP+Y N+VIV+ 
Sbjct: 135 LVADLLMCSGADHIITMDLHDPQFQGFFDIPVDNLFGRPLLKHYISLNIPNYHNAVIVSP 194

Query: 726 NPGSAKKS 749
           + G AK++
Sbjct: 195 DAGGAKRA 202



 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 34/84 (40%), Positives = 51/84 (60%)
 Frame = +1

Query: 256 PELADLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNIMELLI 435
           P+L + I   L +  G   +   +N ET V I  S+RG ++YI+   +  VN+++MELLI
Sbjct: 13  PKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPASGQVNDHLMELLI 72

Query: 436 MAYACKTSSASSIVGVIPYLPYSK 507
           M  ACKT+SA  +  V+P  PYS+
Sbjct: 73  MISACKTASAKKVTAVLPVFPYSR 96


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 258 RSEFPLKITMSDVEFPSILQF*DLFDKPTNLKPTIS 151
           +SE  LK+   DVEFP   +      KPT+L P  S
Sbjct: 202 KSEQKLKVDFVDVEFPEPAEGLPGTPKPTSLHPVFS 237


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 268 DLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTG 396
           DLI+  LG +  GCS     + E ++  AD IR   ++ ++TG
Sbjct: 24  DLISRALGGQVLGCSDDFFASCENLINPADPIRKAGVF-VETG 65


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 459 GSLTSVGHYKQFHYVV 412
           GS     HYKQ+HYVV
Sbjct: 286 GSRLKHSHYKQYHYVV 301


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 100 LNKLFSTFTNIIIKKPSGY 156
           L  L+S FT++ IK P G+
Sbjct: 24  LKSLYSDFTSLFIKNPEGF 42


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 591 TMDLHQKEIQGFFDCPVDNLRASPFLLQYIQESIP 695
           T+ L QKEIQ  FD   D    +PF   + ++ IP
Sbjct: 208 TVKLKQKEIQEMFDTNKDAF-TNPFKGMFYEKPIP 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,324
Number of Sequences: 5004
Number of extensions: 73284
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)