Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0372
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070...    65   5e-11
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    44   1e-04
11_06_0024 - 19331250-19331380,19331412-19331484,19331571-193317...    30   1.7  
04_04_0219 - 23703579-23703747,23703836-23703944,23704170-237042...    30   2.3  
05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266     28   9.3  

>06_03_0763 -
           24405525-24405701,24406209-24406368,24406924-24407005,
           24407098-24407167,24407443-24407607,24407731-24407874,
           24408467-24408715,24409006-24409221,24409306-24409398
          Length = 451

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 32/82 (39%), Positives = 50/82 (60%)
 Frame = +1

Query: 262 LADLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNIMELLIMA 441
           LA  IA+ LGV  G   +    + E  V++ +S+RG +++++Q     VN N+MEL +M 
Sbjct: 101 LAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNENLMELFVMI 160

Query: 442 YACKTSSASSIVGVIPYLPYSK 507
            AC+ +SA SI  VIPY  Y++
Sbjct: 161 DACRRASARSITVVIPYFGYAR 182



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 22/79 (27%), Positives = 43/79 (54%)
 Frame = +3

Query: 513 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQESI 692
           K + R  I +KL A ++ ++G   +I  D+H  +  G+FD PVD++   P +L Y+    
Sbjct: 186 KAQGREAITAKLSANLLTEAGSDRVIVCDIHSTQALGYFDIPVDHIHGQPVILDYLASKT 245

Query: 693 PDYRNSVIVARNPGSAKKS 749
              ++ V+V+ + G   ++
Sbjct: 246 IS-KDLVVVSPDVGGVVRA 263


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = +3

Query: 513 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNL 650
           K + R  I +KL+A M+ ++G + ++  DLH  +  G+FD PVD++
Sbjct: 150 KSQGRESIAAKLVANMITEAGANRVLVCDLHSSQAMGYFDIPVDHV 195


>11_06_0024 -
           19331250-19331380,19331412-19331484,19331571-19331768,
           19333317-19333484,19334187-19334263,19335321-19335423
          Length = 249

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = -3

Query: 610 FWCKSIVIMCERPD----LHIIWAKSLETIHPRFRILHVYCMVSMELHQQ-LNWQRKSYK 446
           FWC   ++    PD    LH+IW K  +    +   ++V   V+ +L +  + W+R   K
Sbjct: 41  FWCTISMLKTTFPDPFQFLHVIWLKEFQKFDDKSSAINVDTGVNKQLTEMIMKWRRPRQK 100


>04_04_0219 -
           23703579-23703747,23703836-23703944,23704170-23704272,
           23704365-23704396,23704855-23705072,23706295-23706618,
           23706982-23707069,23707179-23707263
          Length = 375

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 313 VYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNNIMEL 429
           +Y +  RE ++ I ++     IYI + G  ++NN  M L
Sbjct: 257 IYPEGLRELLLHIKENYGNPTIYITENGVDEINNKTMRL 295


>05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266
          Length = 360

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 352 ADSIRGKNIYIIQTGTKDV 408
           +D I GK++Y+I  GT DV
Sbjct: 161 SDEIAGKSLYVISAGTNDV 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,094,363
Number of Sequences: 37544
Number of extensions: 417602
Number of successful extensions: 903
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)