Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0372
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48574| Best HMM Match : Pribosyltran (HMM E-Value=2.5e-18)         118   5e-27
SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)          89   4e-18
SB_45954| Best HMM Match : VWA (HMM E-Value=4e-26)                     29   3.1  
SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_49415| Best HMM Match : PAH (HMM E-Value=0.75)                      28   7.2  
SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)                       28   7.2  

>SB_48574| Best HMM Match : Pribosyltran (HMM E-Value=2.5e-18)
          Length = 270

 Score =  118 bits (284), Expect = 5e-27
 Identities = 53/79 (67%), Positives = 67/79 (84%)
 Frame = +3

Query: 513 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQESI 692
           KM KRG I +KL+A ++ KSGL+ IITMDLH KEIQGF+D PVDNLRASPF++ YI ES+
Sbjct: 13  KMHKRGAIPAKLMASLLGKSGLTSIITMDLHSKEIQGFYDIPVDNLRASPFIVHYINESV 72

Query: 693 PDYRNSVIVARNPGSAKKS 749
           PD RN+VIVA+NP SA+++
Sbjct: 73  PDCRNAVIVAKNPASAQRA 91


>SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)
          Length = 227

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 41/78 (52%), Positives = 58/78 (74%)
 Frame = +3

Query: 513 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQESI 692
           K + R  I +KL+A M+  +G  HIITMDLH  +IQGFFD PVDNL A P +L++I+E++
Sbjct: 60  KDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENV 119

Query: 693 PDYRNSVIVARNPGSAKK 746
            D++NSVIV+ + G AK+
Sbjct: 120 HDWQNSVIVSPDAGGAKR 137



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 31/58 (53%), Positives = 45/58 (77%)
 Frame = +1

Query: 343 VEIADSIRGKNIYIIQTGTKDVNNNIMELLIMAYACKTSSASSIVGVIPYLPYSKHAK 516
           VEIA+S+RG+++YIIQ+G  ++N+N+MELLIM  ACK +SA  +  VIP  PY++  K
Sbjct: 2   VEIAESVRGEDVYIIQSGCGEINDNMMELLIMINACKIASAQRVTAVIPCFPYARQDK 59


>SB_45954| Best HMM Match : VWA (HMM E-Value=4e-26)
          Length = 715

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 364 RGKNIYIIQTGTKDVNNNIMELLIMAYACKTSSASSIVGVIPYLPYSKHAKCGN 525
           RG  ++ +Q G K ++ +   L    Y   +S      GV+    Y   AKCGN
Sbjct: 112 RGYTVFAVQDGGKCMSADDAHLTYFKYGTSSSCVDGKGGVLANDVYVLGAKCGN 165


>SB_59618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 334 ETIVEIADSIRGKNIYIIQTGTK--DVNNNIMELLIMAYACKTSSASSIVGVI 486
           E + +  D I   +IY+++TG++  +++N + E +I      TS+A+     +
Sbjct: 241 EALFQAVDHIIDMSIYLLKTGSEPSEISNTVKEAIIETATIVTSTAAESTATV 293


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 364 RGKNIYIIQTGTKDVNNNIMELLIMAYACKTSSASSIVGVIPYLPYSKHAKCGN 525
           RG  ++ +Q G K  + +   L    Y   +S      GV+    Y   AKCGN
Sbjct: 105 RGYTVFAVQDGGKCFSADDAHLTYFKYGTSSSCVDGKGGVLANDVYVLGAKCGN 158


>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1265

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 615  IQGFFDCPVDNLRASPFLLQYIQESIPDYRNSVIVARNPGS 737
            +Q   DC V   R  P L ++    +  YR S IV+  PGS
Sbjct: 1192 VQSVLDCFVVGARVFPHLPEFAMMVVQLYRVSWIVSSGPGS 1232


>SB_49415| Best HMM Match : PAH (HMM E-Value=0.75)
          Length = 117

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 568 NQVFHTLS--LWIYTKRKYKDFLTALLII*EHHHSYFSIYKKVFQI 699
           N VF  +   +WI +K+KY+ F   L    E H S    YK V ++
Sbjct: 22  NLVFQAMVHVIWILSKQKYQHFQAVLNTYIEKHFSATIAYKYVTEV 67


>SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)
          Length = 987

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 568 NQVFHTLS--LWIYTKRKYKDFLTALLII*EHHHSYFSIYKKVFQI 699
           N VF  +   +WI +K+KY+ F   L    E H S    YK V ++
Sbjct: 591 NLVFQAMVHVIWILSKQKYQHFQAVLNTYIEKHFSATIAYKYVTEV 636


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,108,068
Number of Sequences: 59808
Number of extensions: 513318
Number of successful extensions: 1118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)