Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0372
(762 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g35390.2 68415.m04339 ribose-phosphate pyrophosphokinase 1 / ... 67 1e-11
At2g35390.1 68415.m04338 ribose-phosphate pyrophosphokinase 1 / ... 67 1e-11
At1g32380.1 68414.m03995 ribose-phosphate pyrophosphokinase 2 / ... 66 2e-11
At2g44530.1 68415.m05539 ribose-phosphate pyrophosphokinase, put... 64 7e-11
At4g15233.1 68417.m02334 ABC transporter family protein similar ... 29 2.6
At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969... 29 4.5
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 29 4.5
At4g27950.1 68417.m04010 AP2 domain-containing transcription fac... 28 7.8
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ... 28 7.8
>At2g35390.2 68415.m04339 ribose-phosphate pyrophosphokinase 1 /
phosphoribosyl diphosphate synthetase 1 (PRSI) identical
to phosphoribosyl diphosphate synthetase 1
(ribose-phosphate pyrophosphokinase 1 (PRS I)
[Arabidopsis thaliana] GI:633140, SP|Q42581
Length = 403
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/90 (35%), Positives = 51/90 (56%)
Frame = +1
Query: 238 FEWKLTPELADLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNN 417
F P LA IA +G+ G ++ + E V++ +S+RG ++Y++Q N N
Sbjct: 96 FSGTANPALAQEIAWYMGLDLGKVNIKRFADGEIYVQLQESVRGCDVYLVQPTCTPTNEN 155
Query: 418 IMELLIMAYACKTSSASSIVGVIPYLPYSK 507
+MELLIM AC+ +SA + VIPY Y++
Sbjct: 156 LMELLIMVDACRRASAKKVTAVIPYFGYAR 185
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +3
Query: 513 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYI-QES 689
K + R I +KL+A ++ ++G ++ DLH + G+FD PVD++ P +L Y+ +S
Sbjct: 189 KTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKS 248
Query: 690 IPDYRNSVIVARNPGSAKKS 749
IP + V+V+ + G ++
Sbjct: 249 IPS-EDLVVVSPDVGGVARA 267
>At2g35390.1 68415.m04338 ribose-phosphate pyrophosphokinase 1 /
phosphoribosyl diphosphate synthetase 1 (PRSI) identical
to phosphoribosyl diphosphate synthetase 1
(ribose-phosphate pyrophosphokinase 1 (PRS I)
[Arabidopsis thaliana] GI:633140, SP|Q42581
Length = 352
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/90 (35%), Positives = 51/90 (56%)
Frame = +1
Query: 238 FEWKLTPELADLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNN 417
F P LA IA +G+ G ++ + E V++ +S+RG ++Y++Q N N
Sbjct: 45 FSGTANPALAQEIAWYMGLDLGKVNIKRFADGEIYVQLQESVRGCDVYLVQPTCTPTNEN 104
Query: 418 IMELLIMAYACKTSSASSIVGVIPYLPYSK 507
+MELLIM AC+ +SA + VIPY Y++
Sbjct: 105 LMELLIMVDACRRASAKKVTAVIPYFGYAR 134
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +3
Query: 513 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYI-QES 689
K + R I +KL+A ++ ++G ++ DLH + G+FD PVD++ P +L Y+ +S
Sbjct: 138 KTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKS 197
Query: 690 IPDYRNSVIVARNPGSAKKS 749
IP + V+V+ + G ++
Sbjct: 198 IPS-EDLVVVSPDVGGVARA 216
>At1g32380.1 68414.m03995 ribose-phosphate pyrophosphokinase 2 /
phosphoribosyl diphosphate synthetase 2 (PRS2) identical
to SP:Q42583 from [Arabidopsis thaliana]; strong
similarity to phosphoribosyl diphosphate synthetase 1
(ribose-phosphate pyrophosphokinase 1 (PRS I)
[Arabidopsis thaliana] GI:633140, SP|Q42581
Length = 400
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/90 (34%), Positives = 51/90 (56%)
Frame = +1
Query: 238 FEWKLTPELADLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNN 417
F P L+ IA +G+ G S+ + E V++ +S+RG +++++Q N N
Sbjct: 93 FSGTANPALSQEIAWYMGLELGKVSIKRFADGEIYVQLKESVRGCDVFLVQPTCTPTNEN 152
Query: 418 IMELLIMAYACKTSSASSIVGVIPYLPYSK 507
+MELLIM AC+ +SA + VIPY Y++
Sbjct: 153 LMELLIMVDACRRASAKKVTAVIPYFGYAR 182
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/79 (27%), Positives = 43/79 (54%)
Frame = +3
Query: 513 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQESI 692
K + R I +KL+A ++ ++G ++ DLH + G+FD PVD++ P +L Y+
Sbjct: 186 KTQGRESIAAKLVANLITEAGADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKS 245
Query: 693 PDYRNSVIVARNPGSAKKS 749
+ V+V+ + G ++
Sbjct: 246 ISSEDLVVVSPDVGGVARA 264
>At2g44530.1 68415.m05539 ribose-phosphate pyrophosphokinase,
putative / phosphoribosyl diphosphate synthetase,
putative very strong similarity to phosphoribosyl
pyrophosphate synthase [Spinacia oleracea] GI:4902849;
contains Pfam profile PF00156: Phosphoribosyl
transferase domain
Length = 394
Score = 64.5 bits (150), Expect = 7e-11
Identities = 31/90 (34%), Positives = 51/90 (56%)
Frame = +1
Query: 238 FEWKLTPELADLIANRLGVRKGGCSVYHKTNRETIVEIADSIRGKNIYIIQTGTKDVNNN 417
F P LA I+ LG+ G + + E V++ +S+RG +++++Q N N
Sbjct: 81 FSGTANPILAQEISCYLGLDLGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANEN 140
Query: 418 IMELLIMAYACKTSSASSIVGVIPYLPYSK 507
+MELL+M AC+ +SA +I VIPY Y++
Sbjct: 141 LMELLVMIDACRRASAKTITAVIPYFGYAR 170
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/79 (29%), Positives = 43/79 (54%)
Frame = +3
Query: 513 KMRKRGCIVSKLLAQMMCKSGLSHIITMDLHQKEIQGFFDCPVDNLRASPFLLQYIQESI 692
K + R I +KL+A ++ +SG ++ DLH + G+FD PVD++ P +L Y+
Sbjct: 174 KTQGRESIAAKLVANLITQSGADRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKA 233
Query: 693 PDYRNSVIVARNPGSAKKS 749
+ V+V+ + G ++
Sbjct: 234 ISSEDLVVVSPDVGGVARA 252
>At4g15233.1 68417.m02334 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1168
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 70 YLTA*TFNCLLNKLFSTFTNIIIKKPSGYSWLQVGGFIE*ISKLQYG 210
++ A T + L S F I++KPS SWL+ G ++ +S + G
Sbjct: 631 FVVATTVGSISIVLLSVFGGFIVRKPSMPSWLEWGFWLSPLSYAEIG 677
>At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969
Pollen specific protein SF21 {Helianthus annuus};
contains Pfam profile PF03096: Ndr family
Length = 346
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/65 (36%), Positives = 34/65 (52%)
Frame = -2
Query: 365 RIESAISTMVSLLVLWYTEQPPLRTPRRLAIKSANSGVSFHSK*QCPTWSSRPYCNFEIY 186
R+++A S +VS++V E+P L T LA+ N F CP +S NF IY
Sbjct: 23 RVKTA-SGVVSVIVYGDREKPALITYPDLAL---NHMSCFQGLFFCPEAASLLLHNFCIY 78
Query: 185 SINPP 171
I+PP
Sbjct: 79 HISPP 83
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 109 LFSTFTNIIIKKPSGYSWLQVGGFIE*ISKLQYG 210
L S F I++KPS SWL+ G ++ +S + G
Sbjct: 660 LLSVFGGFIVRKPSMPSWLEWGFWLSPLSYAEIG 693
>At4g27950.1 68417.m04010 AP2 domain-containing transcription
factor, putative DNA-binding protein Pti6, Lycopersicon
esculentum, gb:U89257
Length = 335
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 249 FPLKITMSDVEFPSILQF*DLFDKPTN-LKPTISRRFFND 133
FPL IT D F L +FD+P + ++PT FFND
Sbjct: 260 FPLDITFLDNYFNESLPDISIFDQPMSPIQPT-ENDFFND 298
>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 597
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 379 YIIQTGTKDVNNNIMELLIMAYACKTSSAS-SIVGVIPYL 495
YII TG DVN + + A C S S SIV +I L
Sbjct: 95 YIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKIL 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,000,485
Number of Sequences: 28952
Number of extensions: 365085
Number of successful extensions: 815
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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