Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0371
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)                  30   2.0  
SB_27030| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)                   29   3.5  
SB_40906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)                       29   6.1  
SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_14436| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_59327| Best HMM Match : DUF919 (HMM E-Value=6.3)                    28   8.1  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)          28   8.1  

>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
          Length = 553

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +3

Query: 309 ALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESRS 488
           ++N+  +     +N I +  NS      +  D D SI   D   + NDN ++Y +  S  
Sbjct: 290 SINDNDNSINDNDNSIYDNDNSINDNDNSINDNDNSINDNDNSIYDNDNSSIYDNDNSIY 349

Query: 489 ENSGT 503
           +N  +
Sbjct: 350 DNDNS 354


>SB_27030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -3

Query: 803 TINNWGPLENSIRL-LIANLKMVTSXIIXXRLFEVILSIVLKLFGSIKNYWISL**YKDL 627
           +++ +  L+++I+      +K V   I    +F +I  +   LFG++K++ I+   +  +
Sbjct: 124 SLDRYFALKSNIKYRTTVTVKRVLISITFIWIFSIIFGVYFTLFGNVKSFSIATGSFGSI 183

Query: 626 CLF 618
           CLF
Sbjct: 184 CLF 186


>SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)
          Length = 374

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/83 (22%), Positives = 34/83 (40%)
 Frame = +3

Query: 210 PNHRKTKP*STS*PSNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYG 389
           P    TK  ST  P       Q   H      T   ++++  KHTE  +    N+  S+ 
Sbjct: 64  PQLTPTKHSSTPTPIQTHRKPQERIHNVLLTKTEAQKKEALVKHTEKKVCPYHNNAASHN 123

Query: 390 YTGIDKDESIVSQDKVAFTNDNG 458
            T   + + ++ ++++ F   NG
Sbjct: 124 LTECKRFKELLYEERLEFLKSNG 146


>SB_40906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 312 LNERKSQDKHTENLIPNLT-NSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKES 482
           ++E + +D+ T N  P L  N  KSY    I   E  ++ ++ +  +  G+L   KES
Sbjct: 41  VDENEPKDEETANQTPTLKDNDEKSYYKVDIPSSEQRITVEERSDDSTRGHLGSPKES 98


>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +3

Query: 192 HSRSWRPNHRKTKP*STS*PSNVENPSQRPEHRD--PQDYTALNERKS-QDKHTENLIPN 362
           H R  R  H +    S S   N E PS R + RD  P +   L   +S +D  T N   N
Sbjct: 80  HRRESRRVHVRNSRCSDSFRGNDEKPSARSDRRDRKPDNQRGLKRSRSRKDDTTANAKRN 139

Query: 363 LTNSHKSYGYTG 398
            +   + + Y G
Sbjct: 140 RSQYQRLHSYRG 151


>SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)
          Length = 1376

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 300 DYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKE 479
           D   L+ + SQ +  +       N H S+   G+D  E++ S+D+ + T         KE
Sbjct: 715 DNCELSSKSSQPESEQVRESKTHNEHVSHAPDGLDTQETVGSKDEDSITERKKT--DQKE 772

Query: 480 SRSENS 497
             SE+S
Sbjct: 773 GNSESS 778


>SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 714

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 479 ISFRKLR-NLNQDTVPKIIYVQTDGLQDNQLYQVAGSSGDSIIMS 610
           +  RKL  NL+    PK++  QTD  +D  +  +   SG ++  S
Sbjct: 216 LPLRKLSSNLSMHDDPKVMKNQTDSFEDTTISLIGSKSGTTLFQS 260


>SB_14436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 249 PSNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTN 371
           P+  ++ +Q P HR PQ+Y+    ++S+ + +    P L N
Sbjct: 81  PTLGDSRNQHPNHRIPQNYSLRTIKRSEIRGSTGSPPTLAN 121


>SB_59327| Best HMM Match : DUF919 (HMM E-Value=6.3)
          Length = 293

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 479 ISFRKLR-NLNQDTVPKIIYVQTDGLQDNQLYQVAGSSGDSIIMS 610
           +  RKL  NL+    PK++  QTD  +D  +  +   SG ++  S
Sbjct: 97  LPLRKLSSNLSMHDDPKVMKNQTDSFEDTTISLIGSKSGTTLFQS 141


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 258  VENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDK 434
            +E    + E    +D T   ER+ +D   EN+  N+ NS  S   + ++    I  +DK
Sbjct: 976  LERRKHQEELETLKDKTLKVERELRDSQQENIKMNIENSKLSRKVSSLESSVEIFEKDK 1034


>SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)
          Length = 1607

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/83 (22%), Positives = 33/83 (39%)
 Frame = +3

Query: 210 PNHRKTKP*STS*PSNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSHKSYG 389
           P    TK  ST  P       Q   H      T   ++++  KHTE  +    N+  S+ 
Sbjct: 535 PQLTPTKHSSTPTPIQTHRKPQERIHNVLLTKTEAQKKEALVKHTEKKVCPYHNNAASHN 594

Query: 390 YTGIDKDESIVSQDKVAFTNDNG 458
            T   + + +  ++++ F   NG
Sbjct: 595 LTECKRFKELPYEERLEFLKSNG 617


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,216,111
Number of Sequences: 59808
Number of extensions: 462424
Number of successful extensions: 1197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)