Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0371
         (832 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22720.1 68418.m02654 F-box family protein contains F-box dom...    29   5.0  
At2g33850.1 68415.m04155 expressed protein contains 1 transmembr...    28   6.6  
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    28   6.6  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    28   6.6  
At4g27860.1 68417.m04000 integral membrane family protein contai...    28   8.7  
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot...    28   8.7  
At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR ...    28   8.7  

>At5g22720.1 68418.m02654 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 422

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 390 YTGIDKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTRI 515
           Y  +DK E ++   ++ + N   + Y+SK  R  NSG+ T++
Sbjct: 234 YLDLDKSEVLIDATRLKYLNLEADQYESKTIR--NSGSLTKV 273


>At2g33850.1 68415.m04155 expressed protein contains 1 transmembrane
           domain; similar to Protein E6 (Swiss-Prot:Q01197)
           [Gossypium hirsutum]
          Length = 267

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +3

Query: 279 PEHRDPQDYTAL--NERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTND 452
           P+ ++P +   +  NE+K  D      IP   N +  YG+   D +   ++ +K    N 
Sbjct: 39  PKEQNPNNLVPIETNEKKEPDDQNPAFIPQSENGYGLYGHETTDNNNEELNNNKYE-DNV 97

Query: 453 NGNLYQSKESRSENSGT 503
           N +   S  S SE + T
Sbjct: 98  NYDDSFSTPSLSETAQT 114


>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 402 DKDESIVSQDKVAFTNDNGNLYQSKESRSENSGT 503
           D+DE     +K      NG++ Q KES SE SG+
Sbjct: 666 DEDEKKDMDEKRGSKKANGSVKQKKESSSEESGS 699


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/69 (21%), Positives = 28/69 (40%)
 Frame = +3

Query: 294 PQDYTALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQS 473
           P  +   N   +Q + ++N+ P   N H+ Y         S  S     + +   N  ++
Sbjct: 88  PNQHRRYNAPDNQHQRSDNIGPPQPNQHRRYNAPDNQHQRSDNSGPPQPYRHRRNNAPEN 147

Query: 474 KESRSENSG 500
           +  RS+N G
Sbjct: 148 QHQRSDNIG 156


>At4g27860.1 68417.m04000 integral membrane family protein contains
           Pfam PF01988: Integral membrane protein
          Length = 611

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 249 PSNVENPSQRPEHRDPQ--DYTALNERKSQDKHTENLIPNLTNSHKS 383
           PS++E PS++  +++ Q  D  A +  +  DK TEN   +LT  + S
Sbjct: 324 PSSLEKPSKQTVNKETQNHDKEAADPDQDVDKETENQKSHLTPIYPS 370


>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 551

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -2

Query: 300 LEGRDVLVSDLDSRRSKVMRYFMVSSFYD*VSKIWNVVASTR 175
           +EG  VL +D DS    V + F V    D V+K + +VASTR
Sbjct: 243 MEGSHVLQNDYDSLDVHVGQCFAVLVTADQVAKNYYMVASTR 284


>At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR
           class), putative / PRM1 homolog, putative similar to
           disease resistance protein rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631;
          Length = 941

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
 Frame = +3

Query: 258 VENPSQRPEHRDPQDYTALNE------RKSQD--KHTENLIPNLTNSHKSYGYTGIDKDE 413
           + NPS+     +P+ +  L++      +KS D  KHT  ++ N     K   Y G D  E
Sbjct: 10  LRNPSRGVGKSEPETFVCLSKDDERSPKKSSDAKKHTSAVVKNCVEEIKEIIYDGEDTIE 69

Query: 414 SIVSQDKVAFTN 449
           + V +  +  T+
Sbjct: 70  TFVLEQNLGKTS 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,534,617
Number of Sequences: 28952
Number of extensions: 327408
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)