Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0370
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    26   0.26 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   1.9  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   9.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   9.9  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = -1

Query: 573 LINNFLLNITTFFVHFNSHNSSTLDK**APYKTLPN---LD---PISMKVLPSKSLGNTT 412
           +IN F  N   F     S++S  LDK    Y++L N   LD    + +K++P+K+ G  T
Sbjct: 26  IINTFYSNKEIFLRELISNSSDALDK--IRYESLTNPSRLDSGKELYIKIIPNKNDGTLT 83

Query: 411 L 409
           +
Sbjct: 84  I 84


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 543 TFFVHFNSHNSST 505
           TF  HFN HNS T
Sbjct: 162 TFRYHFNVHNSGT 174


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 486 PYKTLPNLDPISMKVLPSKSL 424
           PY +LPN   ++ + LP ++L
Sbjct: 481 PYCSLPNSCALTTRELPGETL 501


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 486 PYKTLPNLDPISMKVLPSKSL 424
           PY +LPN   ++ + LP ++L
Sbjct: 488 PYCSLPNSCALTTRELPGETL 508


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,595
Number of Sequences: 336
Number of extensions: 3663
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)