Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0370
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   3.5  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    25   8.1  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   8.1  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -2

Query: 299 ESYLQIHPYHIKTHQMYSVGICAICK--ITNCGGAYFFRRHHS-FKRCF 162
           ES  +++ +    HQ Y +  CA+C   + N  G      H++  K+C+
Sbjct: 398 ESVHEVYGHKFLQHQFYQIMRCALCGEFLKNAAGMQCIDCHYTCHKKCY 446


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 81  YKKDLEEKRSLMKSEDILRNIGDAIKKKAPFEAVMPSE 194
           Y KD+  +R  +KS  I  + G   +++ P E   P +
Sbjct: 274 YGKDIGYERFGLKSTTIASSFGKVFRERKPLEEFAPQD 311


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 162 FSLWHPQCFLKYLLISSKIFSPLNLFYMLD 73
           FS   P CFLK + I  K   P +   ++D
Sbjct: 726 FSFMKPACFLKNVAIGEKYVEPYDHMEIVD 755


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,396
Number of Sequences: 5004
Number of extensions: 58971
Number of successful extensions: 171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)