Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0370
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)              29   4.9  
SB_32049| Best HMM Match : RVT_1 (HMM E-Value=6.7e-15)                 29   4.9  
SB_40227| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  

>SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 696 FFHYQRRNHCVKYDYISSSYNIFLV*NIRMNDFYAISVHREL-INNFLLNITTFFVHFN 523
           F H    N CV  D++ + +N   V    ++ ++  S H  + +N    N +++++H N
Sbjct: 17  FLHVYHNNICVNTDFLHAYHNNICVNTDFLHAYHTASGHNNIRVNTQYYNTSSYYIHLN 75


>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
          Length = 1596

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 329 VDCNSRNIKELIYVSHSMSKSVMMFIFKVVLPKDL-EGKTFIDIG 460
           VD N+  +KE++  SH   +  MM ++ +   K++ EG   +D G
Sbjct: 516 VDLNNPRVKEILSKSHGQPRKRMMHMYDLCKGKNICEGGDEVDAG 560


>SB_32049| Best HMM Match : RVT_1 (HMM E-Value=6.7e-15)
          Length = 716

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = +2

Query: 254 FDEFLYDKDEFEDMTQKKKIQLHYCVDCNSRNIKELIYVSHSMSKSV 394
           F+E + +   F ++    K++   C+D   R  +EL ++S  ++++V
Sbjct: 93  FEELIEEHSVFRNLLFSIKMEYEECIDTIQRGQRELSFLSQKLAQAV 139


>SB_40227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 275 KDEFEDMTQKKKIQLHYCVDCN 340
           KDE ED+   K++ LHYC  CN
Sbjct: 456 KDEQEDIINTKEVPLHYC--CN 475


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
 Frame = -2

Query: 344 VSCNLHNNAIVFFSFESYLQIH-PYHIKT-HQMYSVGICAICKITNCGGAYFFRRHHSFK 171
           +S NLH + IV  S    L+I  P  +++ H+ ++  +C++ K+T    A F R H+  +
Sbjct: 588 LSWNLHVDYIVNKSQPQALRIESPKKVRSAHKGHATQVCSLPKLTGPCMARFIRWHYDMR 647

Query: 170 --RC-FFLYG 150
              C  F YG
Sbjct: 648 SSECKMFTYG 657


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,411,170
Number of Sequences: 59808
Number of extensions: 389636
Number of successful extensions: 932
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)