Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0370
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16730.1 68418.m01959 expressed protein weak similarity to mi...    29   3.0  
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ...    29   4.0  
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta...    29   4.0  
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ...    28   7.0  
At4g33530.1 68417.m04765 potassium transporter family protein si...    27   9.3  

>At5g16730.1 68418.m01959 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 [Drosophila
           melanogaster] GI:2773363, SMC2-like condensin
           [Arabidopsis thaliana] GI:14279543
          Length = 853

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 51  NIEQWINSRAYKKDLEEKRSLMKSEDILRNIGDAIKKKAP 170
           NI++  N+   +  L  ++ + K + +L  +G+ +KKKAP
Sbjct: 810 NIDETGNALTAEDQLTMEKKIKKKKTLLGKVGNLLKKKAP 849


>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 631

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 236 CAICKITNCGGAYFF 192
           C+ CKITN G AY+F
Sbjct: 111 CSACKITNLGTAYYF 125


>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
           BTB/POZ domain, INTERPRO:IPR000210
          Length = 517

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/65 (23%), Positives = 35/65 (53%)
 Frame = +2

Query: 269 YDKDEFEDMTQKKKIQLHYCVDCNSRNIKELIYVSHSMSKSVMMFIFKVVLPKDLEGKTF 448
           Y K+   +MT+++K+Q+   +DC+  +   L++   +  K  + FI + +L + L  +  
Sbjct: 253 YVKEHDGEMTEEEKVQICNSIDCDKLSPPLLLHAVQN-PKMPLRFIVRAMLQEQLNTRHS 311

Query: 449 IDIGS 463
           I + +
Sbjct: 312 IMVAA 316


>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 517

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 236 CAICKITNCGGAYFF 192
           C+ CK+TN G AY+F
Sbjct: 33  CSACKLTNLGTAYYF 47


>At4g33530.1 68417.m04765 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; KUP/HAK/KT Transporter family member,
           PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 855

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 610 SDVLDKKDIITTADIVIFNAVISSLIMKKHKEIW 711
           S + DK+DII    +VI+  ++  L+   H  +W
Sbjct: 135 SPINDKEDIIGALSLVIYTLILIPLVKYVHFVLW 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,962,817
Number of Sequences: 28952
Number of extensions: 281472
Number of successful extensions: 771
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)