Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0369
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 29 0.84
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 28 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.9
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 1.9
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 27 1.9
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 27 2.6
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 27 2.6
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 27 3.4
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 5.9
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 5.9
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 7.8
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 7.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 7.8
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 28.7 bits (61), Expect = 0.84
Identities = 17/64 (26%), Positives = 24/64 (37%)
Frame = -2
Query: 335 LVLGDSPSIDTEPPGSSRPPAMSTSNMLRHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVP 156
L + PS+D P S PP+ S S S P+ + + AP P P
Sbjct: 45 LTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYP 104
Query: 155 ERRG 144
+ G
Sbjct: 105 PQGG 108
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 89 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLD 235
QR K+D+KEK + ++A V+ +E+A L+ A K + K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.9
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Frame = -2
Query: 305 TEPPGSS-RPPAMSTSNMLRHSVGSRVLIRPS--LGTCRLRRDRHRPAPDPVPERR---- 147
+ PP S RP A + N +S L PS + L ++ RP P P P RR
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGK 324
Query: 146 ---GNRSGHTSL 120
GN S ++SL
Sbjct: 325 PPIGNGSSNSSL 336
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 615 PARSPAPGCPSADVRSPGPA 556
PA PAPG P + R P PA
Sbjct: 521 PAGGPAPGYPGMNARGPVPA 540
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -2
Query: 410 RISFTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSNMLRHSVGSR 231
+ S + V S+L + +VL L P P G PA++TSN L + G+R
Sbjct: 69 KASIPTNINGLSQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSNSLERN-GTR 127
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 205 VPRLGRIKTRLPTLWRSIFDVLIAGGLLLPGGSV 306
+P L ++KTR PT+ + V I+ G ++P +V
Sbjct: 523 LPVLEKVKTREPTVVMGMVTVYISAGAIIPEETV 556
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 432 FFQVLVPTHQFYEYLFEISHGVHILIGGEDAGVGLGRFAVHRHRTARQQ-QAASNEYIEY 256
F + PTH F +YL S LI + V + + H + + R + S +Y E+
Sbjct: 146 FMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIMAADSKHNYSSGRPSIRLQSTQYFEH 205
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 641 LLLDDREHFQHEVQRQV-VLQQMFVHQDQQH 552
LLLDDREH H+ + + LQ Q H
Sbjct: 581 LLLDDREHLSHDERSYIQQLQSQIKSQSVHH 611
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 362 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 261
SSL + M V DSP ++ E G S P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 335 LVLGDSPSIDTEPPGSSRPPAMSTSNMLRHSVGSR 231
+V GD+ S+ E PG+++ A L +++ SR
Sbjct: 1115 VVYGDTDSLFVELPGATKEQAFDIGQQLANNITSR 1149
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -2
Query: 440 SNIFSKYLYRRISFTNTCSKFRMVSISSLAE 348
S FS++ Y F NTC F + S E
Sbjct: 460 SKRFSRFYYGHYVFVNTCHNFFLTLYQSFTE 490
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -2
Query: 320 SPSIDTEPPGSSRPPAMSTSNMLRHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVP 156
S S+ P ++R + ++ R S S V ++PS R R +P P+P
Sbjct: 142 SASVSPISPSANRNDSKRQASSFRRSPPSSVHMKPSAFNGRKVSRRPSSSPPPIP 196
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +2
Query: 179 GGDLDAAYKYLDSAGSKLDYRRY--GEAYSMYSL 274
GGDL + L G LDY Y G Y+ +S+
Sbjct: 1378 GGDLTQLHSILSFFGFSLDYNFYSSGRCYAEFSI 1411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,480
Number of Sequences: 5004
Number of extensions: 64340
Number of successful extensions: 229
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -