Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0369
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 60 2e-09
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129... 35 0.053
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 31 0.65
05_05_0007 - 21465506-21466273 31 0.86
03_05_0600 + 26021863-26022469,26022562-26022992 30 1.5
10_08_0842 - 20954712-20957738 29 4.6
10_04_0020 + 7644329-7644666,7644960-7645146,7645311-7645365,764... 29 4.6
06_01_0707 + 5136210-5136584 29 4.6
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 29 4.6
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469... 29 4.6
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938... 29 4.6
12_01_0417 - 3296066-3296356,3296491-3296541,3296657-3296862,329... 28 6.1
09_04_0258 - 16175258-16176069,16176111-16176414 28 6.1
12_02_0749 - 22758317-22760407 28 8.0
09_04_0350 + 16899076-16900164 28 8.0
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 8.0
01_06_1226 - 35518981-35519295,35519876-35520745 28 8.0
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 60.1 bits (139), Expect = 2e-09
Identities = 34/79 (43%), Positives = 46/79 (58%)
Frame = +2
Query: 23 LHNLLISIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAY 202
L +L +S+ C EKP L GQRIKTRKR+ DP F DA+VQ GDL+
Sbjct: 57 LSDLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVA 113
Query: 203 KYLDSAGSKLDYRRYGEAY 259
K ++S S L++ RYG+ +
Sbjct: 114 KSIES--SDLNFSRYGDTF 130
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +1
Query: 253 SIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEK 432
+ F+V+ GG PG ++ + E + + + + K +RR +L K
Sbjct: 129 TFFEVVFIGGRTQPG-TIKPEEEGERHPYSVLDCAAQREAILPSVLYIQKTLRRRPFLIK 187
Query: 433 MFEEEMKKVLVYLKGFDPEQRIKLA 507
E M+K L L+ F+ +R KLA
Sbjct: 188 NLENVMRKFLQSLEFFEENERKKLA 212
>07_01_0183 +
1297445-1297796,1297896-1298424,1298548-1298630,
1298901-1298989,1299091-1299164,1300196-1300246,
1300439-1300515,1302199-1302863
Length = 639
Score = 35.1 bits (77), Expect = 0.053
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 647 AALLLDDREHFQHEVQRQVVLQQMFVHQDQQHGWRHASVT 528
A+ +D+ H H Q+Q QQ HQ QQHG SVT
Sbjct: 28 ASSTMDEHHHVHHHQQQQQQQQQQQHHQQQQHGLFFPSVT 67
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 89 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGEA 256
Q +KT R KY P+ +D G E ++ AAY+ L + Y R+GEA
Sbjct: 77 QEVKTAYRTLARKYHPDMNKDP---GAEEKFKEISAAYEILSDEEKRSLYDRFGEA 129
>05_05_0007 - 21465506-21466273
Length = 255
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 332 PTPASSPPMRIWTPCEISNRYS*N*CVGTSTWKKCSKRK*KRFWST*KASIPNSASSWRH 511
P PA++PP +W C+ +S ++ +K F + ++S NS++ H
Sbjct: 26 PPPAATPPAWMWPSCKHPRAHSFR-SPSAASAAAAAKTIASIFLDSGESSFANSSARMHH 84
Query: 512 DCTVD 526
DC D
Sbjct: 85 DCASD 89
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 317 PSIDTEPPGSSRPPA 273
PS+D EPPG S PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>10_08_0842 - 20954712-20957738
Length = 1008
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -2
Query: 329 LGDSPSIDTEPPGSSRPPAMSTSNMLRHSVGSRVLIRPS-LGTCRLRRDRHRPAPDPVPE 153
L S S D E +S PPA S S S G + RP+ LG +P+ PV +
Sbjct: 226 LNGSSSSDDESKATSAPPARSISGAAGRSNGPSLPSRPAGLGA---STSLSQPSARPVQQ 282
Query: 152 RRGN 141
R N
Sbjct: 283 TRAN 286
>10_04_0020 +
7644329-7644666,7644960-7645146,7645311-7645365,
7645390-7645438,7645984-7646200
Length = 281
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 536 MHASIRAAGPGERTSAEGQPGAGLRAG 616
+ ++R AG G+ GQPG G RAG
Sbjct: 123 LRGALRHAGSGKELGLWGQPGRGKRAG 149
>06_01_0707 + 5136210-5136584
Length = 124
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2
Query: 239 GSRVLIRPSLGTCRLRRDRHRPAP 168
G RVL+ PS GT LRR RP P
Sbjct: 70 GGRVLLSPS-GTSSLRRSHRRPPP 92
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -2
Query: 314 SIDTEPPGSSRPPAMSTSNMLRHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNR 138
S PP +++PP +S N+ + + SR+ +P ++ P DP P ++ R
Sbjct: 110 SAKVSPPPAAKPPKLSPPNLAKATKPSRLAAKPP------KKAAPGPELDPKPRKKAQR 162
>02_05_0425 -
28845707-28846189,28846262-28846403,28846496-28846971,
28848817-28848848,28849429-28849572,28849770-28849841,
28850281-28850296
Length = 454
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +3
Query: 423 LGKNVRRGNE--KGSGLLERLRSRTAHQ 500
LG+ +RG E +GSGLLERL + H+
Sbjct: 23 LGRYTKRGKEDLRGSGLLERLGNACVHR 50
>02_04_0276 +
21491150-21492761,21492891-21492947,21493817-21493870,
21493994-21494022
Length = 583
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 465 LLERLRSRTAHQAGAMTALWIGNGCMPPSVLLVLVNEHLLKDNL 596
+L + R H A + A IGNGCMP ++ E L + L
Sbjct: 480 ILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGL 523
>12_01_0417 -
3296066-3296356,3296491-3296541,3296657-3296862,
3296944-3297237,3297335-3297533,3297620-3297679,
3297786-3297975,3298112-3298245,3298339-3298602,
3299158-3299344,3299476-3299540,3299622-3299776,
3300650-3300735,3301240-3301478
Length = 806
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 572 VHQDQQHGWRHASVTDPQCSHGASLMRCSGSKPF 471
VH + R+ TD + SH SL+R SGS+ F
Sbjct: 404 VHSKIEIPHRYLRSTDDESSHRHSLLRVSGSRKF 437
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 251 RHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNR 138
R G+ +P G RLRR RH A P +R G R
Sbjct: 136 RGEAGAPEAEQPRGGAVRLRRLRHAAAVPPARQRHGRR 173
>12_02_0749 - 22758317-22760407
Length = 696
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -3
Query: 352 RRRCRCWSWAIRRPSTPNR 296
RRRCR S A RRP TP R
Sbjct: 14 RRRCRRLSGANRRPETPPR 32
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 8.0
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 385 RNFAWCPYPHWRRRCRCWSW 326
R W + WR+R CW W
Sbjct: 245 RRRTWRQHGEWRQRSGCWQW 264
>06_01_1032 +
8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 426 GKNVRRGNEKGSGLLERLRSRTAHQAGAMTALWIGNGCMPP 548
G+N+R+G + G + SRT + T L +GN +PP
Sbjct: 228 GQNIRKGKQPGKAGTQGQLSRTVEHDPSHT-LQVGNAQVPP 267
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3
Query: 391 PVRNFAWCPYPHWRRRCRCWSWAIRRPSTPNRPAAAGR 278
P F P+ RR+ RC W + + P AAG+
Sbjct: 200 PEVGFGEAPFAEGRRKARCLMWVSKVAAGEAAPPAAGK 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,713,795
Number of Sequences: 37544
Number of extensions: 523158
Number of successful extensions: 2141
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2137
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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