Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0369
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                    89   3e-18
SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 29   2.7  
SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 29   2.7  
SB_56044| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_40901| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   4.7  
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_45406| Best HMM Match : 7tm_2 (HMM E-Value=5.9)                     28   8.2  
SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  
SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)                       28   8.2  
SB_34250| Best HMM Match : DUF1168 (HMM E-Value=1.3)                   28   8.2  
SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)                  28   8.2  

>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
 Frame = +1

Query: 256 IFDVLIAGGLLLPGGSVSMDGESP---KTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYL 426
           +FDVL A     PGGS+  DG +P   KTN CIF AN D +T+R   Q+  KL+ RY+YL
Sbjct: 52  LFDVLFAA----PGGSIVEDGPNPSTYKTNICIFEANNDNETLRKHVQMHNKLICRYRYL 107

Query: 427 EKMFEEEMKKVLVYLKGFDPEQRIKLA 507
           +K +E+EM K+L++LKGF  E+R KLA
Sbjct: 108 QKSYEDEMNKILLFLKGFTDEEREKLA 134



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
 Frame = +2

Query: 116 EKEKYDPNGFRDALVQGLERA---GGDLDAAYKYLDSAGSKLDYRRYGE 253
           EKEK+ P GFRDA++ GL      G DL+   K+LD++G KL+YR YGE
Sbjct: 2   EKEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKFLDTSGGKLNYRLYGE 50


>SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 609

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 93  GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 239
           G +  KE +K     TV  T  +     P AIS+QPT    +P  D+N  T
Sbjct: 40  GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90


>SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 366

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 93  GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 239
           G +  KE +K     TV  T  +     P AIS+QPT    +P  D+N  T
Sbjct: 40  GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90


>SB_56044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 572

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = +3

Query: 375 AKFRTGIRKTDASVQVLGKNVRRGNE------KGSGLLERLRSRTAHQAGAMTALWIGNG 536
           A FR+  R   ASV +L   V  GN+      + S   +++  R A  A  +  LW+ N 
Sbjct: 225 ALFRSAARMVMASVVLLCVCVLPGNDFIVVAIRLSVARKKIPCRMASVATILQFLWLVNS 284

Query: 537 CMPPSVLLVLVNE 575
           C+ P V  V + +
Sbjct: 285 CLSPLVYFVFLRD 297


>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
 Frame = +2

Query: 86  GQRIKTRKRDEK-----EKYDPNGFRDALVQGLER 175
           G++ K RK DEK     +K+DP+G    LV+ LER
Sbjct: 204 GEKDKGRKSDEKSEDGEKKFDPSGCDKDLVEALER 238


>SB_40901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -2

Query: 653 GDAALLLDDREHFQHEVQRQVVLQQMFVHQDQQH 552
           G+ A+  ++ E F+HEV + ++ + M V  ++QH
Sbjct: 36  GETAIEAENEEDFEHEVLKFLLYRNMEVSPEEQH 69


>SB_14127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1185

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = -2

Query: 299 PPGSSRPPAMSTSNMLRHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNRSGHTSL 120
           PP   + P M +++ L  S+ S   +  S+ +    R+    AP P+P++ G      S+
Sbjct: 254 PPEEPQSPVMGSTSTLNSSMTS---LSSSMSSLSALREEDESAP-PIPDKEGRPPSDPSV 309

Query: 119 SHLFFWS*SVDPI 81
             L       DP+
Sbjct: 310 DRLVLVRPPSDPV 322


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 57  VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSGP 179
           V R K +  RV     + + R+R   +     LWYR WS P
Sbjct: 560 VEREKREKERVQKKLEKDKERERQREQKRKEALWYREWSRP 600


>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 444 LFEHFFQVLVPTHQFYEYLFEISHGVHILIGGEDAG 337
           +F H     VPT QF +Y  EIS  + I +GG   G
Sbjct: 140 VFAHIISTEVPTVQFNQYWVEISDAL-ISLGGVSQG 174


>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 401 FTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPA 273
           +  + S+ R +++++   ++QV      PSI ++PP    PPA
Sbjct: 127 YQRSTSQDRHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPA 169


>SB_45406| Best HMM Match : 7tm_2 (HMM E-Value=5.9)
          Length = 225

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = -2

Query: 284 RPPAMSTSNMLRHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNRSGHTSLSHL 111
           R P +S   + RH         P+L  CRLRR +  P       RR  RS   SL  L
Sbjct: 145 RAPTLSLRKLRRHKRA------PTLSLCRLRRHKRAPTLSLRRLRRHKRSPTLSLRRL 196


>SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 532 LPIHSAVMAPA*CAVRDRSLSSRPEPFSFPLRTFFP 425
           L IH  +  P   AV+   L+   EPFS   + FFP
Sbjct: 447 LCIHKEIEVPRNQAVQQGLLNKTQEPFSIRAKQFFP 482


>SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)
          Length = 109

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 358 EDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKV 459
           +DM  MR   Q++ K MRR + L +M  ++M+++
Sbjct: 68  KDMRRMRGLHQMWAKDMRRMRSLPQMRAKDMRRM 101


>SB_34250| Best HMM Match : DUF1168 (HMM E-Value=1.3)
          Length = 642

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 306 VDGRRIAQDQHLHLLRQ*GYGHHAK--FRTGIRKTDASVQVLGKNVRRGNEKGSGLLERL 479
           +D  R A ++ L L+R  G     K  +    R+T +    LG+NV +G +  S  L +L
Sbjct: 519 MDPHRTAYERALALVRGRGLPADTKGLYNKTSRRTFSYFSGLGENVVKGRQGNSKKLSKL 578

Query: 480 RSRTAHQA 503
            S++  +A
Sbjct: 579 ESKSTGRA 586


>SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)
          Length = 409

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 212 LGTCRLRRDRHRPAPDPVPERRGNRSGHTSLSHLFFWS*S-VDPIILVF 69
           L  C + RDR+     P+   R   + HT++  +F W  S V  +I ++
Sbjct: 26  LSLCAITRDRYLAVTSPLQYLRRMPNAHTAVQIVFCWVTSLVSAVITIY 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,667,004
Number of Sequences: 59808
Number of extensions: 524379
Number of successful extensions: 1900
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1895
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)