Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0368
(407 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P75857 Cluster: Uncharacterized outer membrane usher pr... 144 5e-34
UniRef50_Q1R5K1 Cluster: Outer membrane usher protein AufC; n=5;... 83 3e-15
UniRef50_P37924 Cluster: Outer membrane usher protein fimD precu... 69 3e-11
UniRef50_Q8VPB7 Cluster: LpfC; n=10; Enterobacteriaceae|Rep: Lpf... 67 1e-10
UniRef50_A1JKX5 Cluster: Outer membrane usher protein precursor;... 60 2e-08
UniRef50_Q8GFC9 Cluster: PhfD; n=3; Photorhabdus luminescens|Rep... 59 3e-08
UniRef50_P72211 Cluster: Outer membrane usher protein; n=1; Prot... 58 5e-08
UniRef50_P46009 Cluster: Outer membrane usher protein focD precu... 58 5e-08
UniRef50_UPI00005F7ED2 Cluster: COG3188: P pilus assembly protei... 57 1e-07
UniRef50_P43662 Cluster: Outer membrane usher protein lpfC precu... 56 4e-07
UniRef50_Q7N8E3 Cluster: Similar to outer membrane usher protein... 52 3e-06
UniRef50_Q9PH65 Cluster: Outer membrane usher protein; n=5; Xant... 51 1e-05
UniRef50_Q0VTH0 Cluster: Type 1 pili subunit FimD; n=1; Alcanivo... 51 1e-05
UniRef50_UPI00015C6227 Cluster: hypothetical protein CKO_04372; ... 50 2e-05
UniRef50_A7ML89 Cluster: Putative uncharacterized protein; n=1; ... 49 3e-05
UniRef50_Q0JZF2 Cluster: Outer membrane fimbrial usher porin, FU... 49 4e-05
UniRef50_A6TCS3 Cluster: Putative export and assembly of type 1 ... 48 6e-05
UniRef50_P21865 Cluster: Sensor protein kdpD; n=41; Proteobacter... 48 6e-05
UniRef50_A4WBN9 Cluster: Fimbrial biogenesis outer membrane ushe... 48 7e-05
UniRef50_Q9I1Y5 Cluster: Usher CupA3; n=7; Pseudomonas aeruginos... 47 1e-04
UniRef50_UPI00005FA14E Cluster: COG3188: P pilus assembly protei... 47 2e-04
UniRef50_UPI00005F80A3 Cluster: COG3188: P pilus assembly protei... 47 2e-04
UniRef50_P33410 Cluster: Outer membrane usher protein fimC precu... 45 5e-04
UniRef50_A6TDX6 Cluster: Putative fimbrial biogenesis outer memb... 45 7e-04
UniRef50_A6TCS1 Cluster: Outer membrane protein; export and asse... 44 9e-04
UniRef50_A5WGG6 Cluster: Fimbrial biogenesis outer membrane ushe... 43 0.002
UniRef50_Q6FFQ9 Cluster: Putative outer membrane usher protein; ... 43 0.003
UniRef50_A0IPA4 Cluster: Fimbrial biogenesis outer membrane ushe... 43 0.003
UniRef50_Q1LQW6 Cluster: Fimbrial biogenesis outer membrane ushe... 42 0.004
UniRef50_Q62KN8 Cluster: Outer membrane usher protein; n=15; Bur... 42 0.005
UniRef50_Q9HWU4 Cluster: Usher CupB3; n=9; Proteobacteria|Rep: U... 42 0.006
UniRef50_A5W749 Cluster: Fimbrial biogenesis outer membrane ushe... 42 0.006
UniRef50_A4TLG2 Cluster: Outer membrane usher protein precursor;... 42 0.006
UniRef50_A0IJZ5 Cluster: Fimbrial biogenesis outer membrane ushe... 42 0.006
UniRef50_UPI00005F9B12 Cluster: COG3188: P pilus assembly protei... 41 0.008
UniRef50_Q5PFZ4 Cluster: Outer membrane fimbrial usher protein; ... 41 0.008
UniRef50_Q2L055 Cluster: Outer membrane fimbrial usher protein p... 41 0.011
UniRef50_A1HFZ5 Cluster: Fimbrial biogenesis outer membrane ushe... 41 0.011
UniRef50_A1RPW6 Cluster: Fimbrial biogenesis outer membrane ushe... 40 0.015
UniRef50_UPI00015C61E6 Cluster: hypothetical protein CKO_04363; ... 40 0.019
UniRef50_Q7AFL4 Cluster: Putative outer membrane usher protein; ... 40 0.025
UniRef50_A0THS4 Cluster: Fimbrial biogenesis outer membrane ushe... 40 0.025
UniRef50_A7ME55 Cluster: Putative uncharacterized protein; n=1; ... 39 0.034
UniRef50_A4Y249 Cluster: Fimbrial biogenesis outer membrane ushe... 39 0.045
UniRef50_UPI00005F8BE3 Cluster: COG3188: P pilus assembly protei... 38 0.059
UniRef50_Q9I4X5 Cluster: Usher CupC3; n=8; Proteobacteria|Rep: U... 38 0.078
UniRef50_Q8ZRR6 Cluster: Putativie fimbrial usher; n=2; Salmonel... 38 0.078
UniRef50_Q7NYH8 Cluster: Outer membrane usher protein; n=1; Chro... 38 0.078
UniRef50_Q0HI10 Cluster: Fimbrial biogenesis outer membrane ushe... 38 0.10
UniRef50_A0GEL0 Cluster: Fimbrial biogenesis outer membrane ushe... 38 0.10
UniRef50_UPI00005F9F29 Cluster: COG3188: P pilus assembly protei... 37 0.14
UniRef50_Q7N944 Cluster: Similar to outer membrane usher protein... 37 0.18
UniRef50_Q47198 Cluster: Transmembrane protein; n=5; Escherichia... 37 0.18
UniRef50_A4TJY7 Cluster: Fimbrial usher protein precursor; n=13;... 37 0.18
UniRef50_P42915 Cluster: Uncharacterized outer membrane usher pr... 37 0.18
UniRef50_P45997 Cluster: Outer membrane usher protein hifC precu... 37 0.18
UniRef50_P46000 Cluster: Outer membrane usher protein fasD precu... 37 0.18
UniRef50_Q7N9P7 Cluster: Similar to outer membrane usher protein... 36 0.24
UniRef50_Q13L13 Cluster: Putative outer membrane fimbrial usher ... 36 0.24
UniRef50_P33129 Cluster: Outer membrane usher protein htrE precu... 36 0.42
UniRef50_Q8XU09 Cluster: Sensor protein; n=8; Burkholderiaceae|R... 35 0.55
UniRef50_Q392X5 Cluster: Sensor protein; n=1; Burkholderia sp. 3... 35 0.73
UniRef50_P15484 Cluster: Outer membrane usher protein CS3-2; n=5... 35 0.73
UniRef50_P53517 Cluster: Outer membrane usher protein afaC precu... 35 0.73
UniRef50_Q4AGX7 Cluster: Sensor protein; n=1; Chlorobium phaeoba... 34 1.3
UniRef50_Q63P53 Cluster: Outer membrane usher protein; n=15; Bur... 33 1.7
UniRef50_A6TH60 Cluster: Putative fimbrial biogenesis outer memb... 33 1.7
UniRef50_A0IM58 Cluster: Fimbrial biogenesis outer membrane ushe... 33 1.7
UniRef50_Q8Y3Z9 Cluster: Sensor protein; n=15; Firmicutes|Rep: S... 33 2.2
UniRef50_Q6MM82 Cluster: Two-component sensor KdpD precursor; n=... 33 2.2
UniRef50_Q1Z632 Cluster: Sensor protein; n=3; Vibrionaceae|Rep: ... 33 2.2
UniRef50_A2DZB0 Cluster: TPR Domain containing protein; n=1; Tri... 33 2.2
UniRef50_Q7W533 Cluster: Sensor protein; n=5; Burkholderiales|Re... 33 2.9
UniRef50_Q1CWY7 Cluster: Sensor protein; n=1; Myxococcus xanthus... 33 2.9
UniRef50_A0ZA61 Cluster: Sensor protein; n=1; Nodularia spumigen... 33 2.9
UniRef50_A6TGZ4 Cluster: Putative outer membrane usher protein; ... 32 3.9
UniRef50_P21647 Cluster: Outer membrane usher protein mrkC precu... 32 3.9
UniRef50_Q1LMT0 Cluster: Fimbrial biogenesis outer membrane ushe... 32 5.1
UniRef50_A5FWF2 Cluster: Sensor protein; n=2; Acidiphilium crypt... 32 5.1
UniRef50_Q893L4 Cluster: Sensor protein; n=1; Clostridium tetani... 31 6.8
UniRef50_Q6N5H3 Cluster: Sensor protein; n=16; Alphaproteobacter... 31 6.8
UniRef50_P72936 Cluster: Sensor protein; n=1; Synechocystis sp. ... 31 6.8
UniRef50_A7H7D5 Cluster: PAS/PAC sensor signal transduction hist... 31 6.8
UniRef50_A6EHZ5 Cluster: Sensor protein; n=1; Pedobacter sp. BAL... 31 6.8
UniRef50_Q7NXN0 Cluster: Sensor protein; n=2; Bacteria|Rep: Sens... 31 8.9
UniRef50_Q5NQA1 Cluster: Sensor protein; n=1; Zymomonas mobilis|... 31 8.9
UniRef50_Q47A44 Cluster: Sensor protein; n=1; Dechloromonas arom... 31 8.9
UniRef50_Q4IX66 Cluster: ATP-binding region, ATPase-like:Histidi... 31 8.9
UniRef50_Q1K1W8 Cluster: Multi-sensor signal transduction histid... 31 8.9
UniRef50_Q09E75 Cluster: Sensor protein; n=3; Bacteria|Rep: Sens... 31 8.9
UniRef50_A6X5I1 Cluster: Sensor protein; n=3; Rhizobiales|Rep: S... 31 8.9
UniRef50_A6EEB2 Cluster: Sensor protein; n=1; Pedobacter sp. BAL... 31 8.9
UniRef50_A0VDN8 Cluster: Sensor protein; n=3; Proteobacteria|Rep... 31 8.9
>UniRef50_P75857 Cluster: Uncharacterized outer membrane usher
protein ycbS precursor; n=26; Enterobacteriaceae|Rep:
Uncharacterized outer membrane usher protein ycbS
precursor - Escherichia coli (strain K12)
Length = 866
Score = 144 bits (350), Expect = 5e-34
Identities = 69/85 (81%), Positives = 70/85 (82%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDAD 76
+ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNT IKDLSLGISWNYSKSRGQPDAD
Sbjct: 517 NISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSLGISWNYSKSRGQPDAD 576
Query: 75 QVFAXXXXXXXXXXXXXXNDSYTRK 1
QVFA NDSYTRK
Sbjct: 577 QVFALNFSLPLNLLLPRSNDSYTRK 601
Score = 70.9 bits (166), Expect = 9e-12
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = -1
Query: 362 FKEWPVNEFNDGDDEDTPMWSRYYNLFYTKRGKLQV 255
+K EFNDGDDEDTPMWSRYYNLFYTKRGKLQV
Sbjct: 481 YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQV 516
>UniRef50_Q1R5K1 Cluster: Outer membrane usher protein AufC; n=5;
Escherichia coli|Rep: Outer membrane usher protein AufC
- Escherichia coli (strain UTI89 / UPEC)
Length = 864
Score = 82.6 bits (195), Expect = 3e-15
Identities = 36/61 (59%), Positives = 46/61 (75%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDADQ 73
+SQ G YGS YLS SQQTYW+TD++D L Q GYNT IK + L ++WNYSKS G +AD+
Sbjct: 517 VSQPFGNYGSMYLSASQQTYWNTDKKDSLYQVGYNTSIKGIYLNVAWNYSKSPG-TNADK 575
Query: 72 V 70
+
Sbjct: 576 I 576
>UniRef50_P37924 Cluster: Outer membrane usher protein fimD
precursor; n=21; Enterobacteriaceae|Rep: Outer membrane
usher protein fimD precursor - Salmonella typhimurium
Length = 870
Score = 69.3 bits (162), Expect = 3e-11
Identities = 30/64 (46%), Positives = 43/64 (67%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDAD 76
+ISQ LG+YGS YLSGSQQ YW+T + Q GY + + +S +SW++S+S G AD
Sbjct: 522 NISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGWQGISYSLSWSWSESVGSSGAD 581
Query: 75 QVFA 64
++ A
Sbjct: 582 RILA 585
>UniRef50_Q8VPB7 Cluster: LpfC; n=10; Enterobacteriaceae|Rep: LpfC -
Escherichia coli
Length = 840
Score = 66.9 bits (156), Expect = 1e-10
Identities = 29/58 (50%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Frame = -3
Query: 258 GHISQQLG-EYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQ 88
G ++Q LG +YG+ YL+ S+Q YWHTD +RL+QFGY++ K LS +SW+YS + Q
Sbjct: 490 GTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQ 547
>UniRef50_A1JKX5 Cluster: Outer membrane usher protein precursor;
n=4; Enterobacteriaceae|Rep: Outer membrane usher
protein precursor - Yersinia enterocolitica serotype O:8
/ biotype 1B (strain 8081)
Length = 857
Score = 59.7 bits (138), Expect = 2e-08
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = -3
Query: 267 QTAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQ 88
+T HISQ L ++GS YLS QQ YW +R GYN + +S ++++YS++ GQ
Sbjct: 517 RTQLHISQSLNDFGSLYLSAYQQDYWQRKGYERSATLGYNISLSGISYSLNYSYSQTPGQ 576
Query: 87 PDADQ 73
DQ
Sbjct: 577 QQNDQ 581
>UniRef50_Q8GFC9 Cluster: PhfD; n=3; Photorhabdus luminescens|Rep:
PhfD - Photorhabdus luminescens (Xenorhabdus
luminescens)
Length = 835
Score = 59.3 bits (137), Expect = 3e-08
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTD-QQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDAD 76
+ Q LG+YGS LS QQ YW +++ YNT I+D+SL +S+NY ++R + D
Sbjct: 492 MGQSLGQYGSLSLSAWQQDYWQDKTSKNQSYSMSYNTNIRDISLSLSYNYHRNRSNINND 551
Query: 75 QVFA 64
QVF+
Sbjct: 552 QVFS 555
>UniRef50_P72211 Cluster: Outer membrane usher protein; n=1; Proteus
mirabilis|Rep: Outer membrane usher protein - Proteus
mirabilis
Length = 843
Score = 58.4 bits (135), Expect = 5e-08
Identities = 24/64 (37%), Positives = 41/64 (64%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDAD 76
++SQQLG+YGS ++ + Q YW T++++ L+Q GYN IK LS + ++Y++ D
Sbjct: 501 NLSQQLGDYGSIFMMTNWQNYWGTNEKNVLVQTGYNGNIKGLSYNVIYSYNRMMNSGQRD 560
Query: 75 QVFA 64
Q +
Sbjct: 561 QTLS 564
>UniRef50_P46009 Cluster: Outer membrane usher protein focD
precursor; n=50; Enterobacteriaceae|Rep: Outer membrane
usher protein focD precursor - Escherichia coli
Length = 875
Score = 58.4 bits (135), Expect = 5e-08
Identities = 24/66 (36%), Positives = 41/66 (62%)
Frame = -3
Query: 261 AGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPD 82
AG GE + YLSGS Q+YW TD+ DR L G+N+ + D+S ++++ S++ Q +
Sbjct: 528 AGEYQPADGESSTLYLSGSHQSYWGTDRTDRQLNAGFNSSVNDISWSLNYSLSRNAWQHE 587
Query: 81 ADQVFA 64
D++ +
Sbjct: 588 TDRILS 593
>UniRef50_UPI00005F7ED2 Cluster: COG3188: P pilus assembly protein,
porin PapC; n=1; Yersinia mollaretii ATCC 43969|Rep:
COG3188: P pilus assembly protein, porin PapC - Yersinia
mollaretii ATCC 43969
Length = 850
Score = 57.2 bits (132), Expect = 1e-07
Identities = 22/58 (37%), Positives = 41/58 (70%)
Frame = -3
Query: 237 GEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDADQVFA 64
G G+ +LS +Q++YW+T++ + L Q GYNT I +++ +++NY+K+ +ADQ F+
Sbjct: 511 GTNGTAFLSANQKSYWNTNKTNELFQVGYNTNINNINYSLAYNYNKNPWLSNADQAFS 568
>UniRef50_P43662 Cluster: Outer membrane usher protein lpfC
precursor; n=8; Enterobacteriaceae|Rep: Outer membrane
usher protein lpfC precursor - Salmonella typhimurium
Length = 842
Score = 55.6 bits (128), Expect = 4e-07
Identities = 23/72 (31%), Positives = 45/72 (62%)
Frame = -3
Query: 279 HQTWQTAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSK 100
H+ Q G+++QQLG +GS Y + +QQ YW+ + + R L GYN I ++ +++ ++K
Sbjct: 500 HKRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVNYSVAYTWTK 559
Query: 99 SRGQPDADQVFA 64
S ++D++ +
Sbjct: 560 SPEWDESDRLLS 571
>UniRef50_Q7N8E3 Cluster: Similar to outer membrane usher protein;
n=2; Photorhabdus luminescens subsp. laumondii|Rep:
Similar to outer membrane usher protein - Photorhabdus
luminescens subsp. laumondii
Length = 880
Score = 52.4 bits (120), Expect = 3e-06
Identities = 24/62 (38%), Positives = 36/62 (58%)
Frame = -3
Query: 273 TWQTAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSR 94
TWQ ++ Q LG +GS Y SG+ YW+ + D L GYN + +S +S+N S+ R
Sbjct: 535 TWQV--NLRQTLGRWGSLYASGTHNNYWN-GRTDNNLSLGYNAMLMGISYNLSYNISRIR 591
Query: 93 GQ 88
G+
Sbjct: 592 GE 593
>UniRef50_Q9PH65 Cluster: Outer membrane usher protein; n=5;
Xanthomonadaceae|Rep: Outer membrane usher protein -
Xylella fastidiosa
Length = 901
Score = 50.8 bits (116), Expect = 1e-05
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDADQ 73
+SQQLG+YGS YL+GS + YW+ Q GYN K +S G+S S+ P Q
Sbjct: 566 VSQQLGQYGSLYLTGSARQYWNQRGNTIQYQGGYNVSYKGVSYGLSALRSQIPSMPSDTQ 625
Query: 72 V 70
+
Sbjct: 626 M 626
>UniRef50_Q0VTH0 Cluster: Type 1 pili subunit FimD; n=1; Alcanivorax
borkumensis SK2|Rep: Type 1 pili subunit FimD -
Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM
11573)
Length = 820
Score = 50.8 bits (116), Expect = 1e-05
Identities = 19/52 (36%), Positives = 34/52 (65%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
++Q LG YGS Y +GSQ+ YW T + L GY+ KD++ +S++++++
Sbjct: 487 LTQSLGSYGSLYFTGSQEKYWKTKGERNFLVSGYSNNYKDMNYSLSFSHNEN 538
>UniRef50_UPI00015C6227 Cluster: hypothetical protein CKO_04372;
n=1; Citrobacter koseri ATCC BAA-895|Rep: hypothetical
protein CKO_04372 - Citrobacter koseri ATCC BAA-895
Length = 833
Score = 49.6 bits (113), Expect = 2e-05
Identities = 21/61 (34%), Positives = 39/61 (63%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDADQ 73
++Q+LG++G+ LS QQ YW D +R + GYNT I +++ G++++YS+ + D
Sbjct: 505 LNQRLGDWGNINLSAWQQDYWGGD-TERSVNVGYNTSINNINYGLNYSYSRGPWHNENDH 563
Query: 72 V 70
+
Sbjct: 564 I 564
>UniRef50_A7ML89 Cluster: Putative uncharacterized protein; n=1;
Enterobacter sakazakii ATCC BAA-894|Rep: Putative
uncharacterized protein - Enterobacter sakazakii ATCC
BAA-894
Length = 889
Score = 49.2 bits (112), Expect = 3e-05
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = -3
Query: 285 VLHQTWQTAGHISQQLGE-YGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLG--IS 115
+L Q +SQ L + +G FYLSGS Q YW+ D+ Q GYN K L+ G +S
Sbjct: 513 ILRMKNQFVATVSQGLDDGWGQFYLSGSLQDYWNKAGSDKQFQVGYNNNYKSLTYGVTVS 572
Query: 114 WNYSK-SRGQ 88
YSK + GQ
Sbjct: 573 RTYSKENEGQ 582
>UniRef50_Q0JZF2 Cluster: Outer membrane fimbrial usher porin, FUP
family precursor; n=5; Cupriavidus|Rep: Outer membrane
fimbrial usher porin, FUP family precursor - Ralstonia
eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier
337)(Cupriavidus necator (strain ATCC 17699 / H16 / DSM
428 / Stanier337))
Length = 877
Score = 48.8 bits (111), Expect = 4e-05
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = -3
Query: 252 ISQQLGE-YGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGIS 115
I+Q L + YGSFYLSGS Q YW+ D Q GYN K ++ G+S
Sbjct: 534 INQMLPQGYGSFYLSGSTQNYWNRGGSDTQFQAGYNNSYKRINYGVS 580
>UniRef50_A6TCS3 Cluster: Putative export and assembly of type 1
fimbriae, usher; n=1; Klebsiella pneumoniae subsp.
pneumoniae MGH 78578|Rep: Putative export and assembly
of type 1 fimbriae, usher - Klebsiella pneumoniae subsp.
pneumoniae MGH 78578
Length = 829
Score = 48.4 bits (110), Expect = 6e-05
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDADQ 73
+SQ LG GS +S Q YWH +D + G+ + K +S G+ + Y+++ GQ D+
Sbjct: 485 VSQSLGGLGSLAVSAWSQEYWHRQSRDETVHLGFYSAWKGISWGVGYYYTRTSGQQKNDR 544
>UniRef50_P21865 Cluster: Sensor protein kdpD; n=41;
Proteobacteria|Rep: Sensor protein kdpD - Escherichia
coli (strain K12)
Length = 894
Score = 48.4 bits (110), Expect = 6e-05
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +3
Query: 342 VDGPLFERVLINLLENAVKYAG 407
VDGPLFERVLINLLENAVKYAG
Sbjct: 773 VDGPLFERVLINLLENAVKYAG 794
>UniRef50_A4WBN9 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=2; Enterobacteriaceae|Rep: Fimbrial
biogenesis outer membrane usher protein precursor -
Enterobacter sp. 638
Length = 851
Score = 48.0 bits (109), Expect = 7e-05
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDADQ 73
ISQ++ + S YL+G QQ YW T Q +R + G NT +K +S +++ YS++ +
Sbjct: 507 ISQKIYDV-SLYLNGYQQDYWDTSQTERSISAGLNTVVKSISFHLAYTYSETNDSENDQM 565
Query: 72 V 70
V
Sbjct: 566 V 566
>UniRef50_Q9I1Y5 Cluster: Usher CupA3; n=7; Pseudomonas
aeruginosa|Rep: Usher CupA3 - Pseudomonas aeruginosa
Length = 872
Score = 47.2 bits (107), Expect = 1e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWN 109
+SQ LG YG+ YLSGS ++ +D LQFGY+ LS ++W+
Sbjct: 504 VSQALGGYGNLYLSGSSSDFYDGKSRDTQLQFGYSNTWGQLSYNLAWS 551
>UniRef50_UPI00005FA14E Cluster: COG3188: P pilus assembly protein,
porin PapC; n=3; Yersinia|Rep: COG3188: P pilus assembly
protein, porin PapC - Yersinia intermedia ATCC 29909
Length = 872
Score = 46.8 bits (106), Expect = 2e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -3
Query: 231 YGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
+G Y+SGS Q YW+ D D+ Q GY+ K ++ G+S N S+S
Sbjct: 527 WGQMYISGSLQDYWNKDGSDQQYQVGYSNNYKSMTYGVSVNRSRS 571
>UniRef50_UPI00005F80A3 Cluster: COG3188: P pilus assembly protein,
porin PapC; n=2; Yersinia|Rep: COG3188: P pilus assembly
protein, porin PapC - Yersinia mollaretii ATCC 43969
Length = 700
Score = 46.8 bits (106), Expect = 2e-04
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDADQ 73
+SQ +G+ G+ LS +Q YWH+D+ Q +N +S G+S+ S S D
Sbjct: 364 LSQSMGDAGALSLSWDKQAYWHSDKSAESAQLAWNNTFGRISYGVSYQRSTSLYDSKKDN 423
Query: 72 VFA 64
+F+
Sbjct: 424 IFS 426
>UniRef50_P33410 Cluster: Outer membrane usher protein fimC
precursor; n=3; Bordetella|Rep: Outer membrane usher
protein fimC precursor - Bordetella pertussis
Length = 873
Score = 45.2 bits (102), Expect = 5e-04
Identities = 18/53 (33%), Positives = 34/53 (64%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSR 94
+SQ LG YGS Y+S ++TYW + + D+ Q GY+T + + + + + +++R
Sbjct: 510 LSQPLGGYGSLYVSALRRTYWGSSRVDQQTQLGYSTQVGRVGVNLDVSRTENR 562
>UniRef50_A6TDX6 Cluster: Putative fimbrial biogenesis outer
membrane usher protein; n=1; Klebsiella pneumoniae
subsp. pneumoniae MGH 78578|Rep: Putative fimbrial
biogenesis outer membrane usher protein - Klebsiella
pneumoniae subsp. pneumoniae MGH 78578
Length = 869
Score = 44.8 bits (101), Expect = 7e-04
Identities = 16/53 (30%), Positives = 33/53 (62%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSR 94
+SQQLG++G+ Y S+ YW ++ + GY+ +K +S G+++N +++
Sbjct: 520 LSQQLGDWGTMYFRASRDDYWGGERTLTGMSLGYSNSLKGVSYGVNYNIDRTK 572
>UniRef50_A6TCS1 Cluster: Outer membrane protein; export and
assembly of type 1 fimbriae; n=1; Klebsiella pneumoniae
subsp. pneumoniae MGH 78578|Rep: Outer membrane protein;
export and assembly of type 1 fimbriae - Klebsiella
pneumoniae subsp. pneumoniae MGH 78578
Length = 845
Score = 44.4 bits (100), Expect = 9e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Frame = -3
Query: 246 QQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDADQV 70
Q LG+ +F+L+ SQQ YW++ D LQ G+N+ I +++ G+ + ++S D + +
Sbjct: 506 QTLGKNSAFFLNFSQQNYWNSSGSDISLQAGFNSTIHNVNYGLYYQNTRSHFTHDDNSI 564
>UniRef50_A5WGG6 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=2; Moraxellaceae|Rep: Fimbrial
biogenesis outer membrane usher protein precursor -
Psychrobacter sp. PRwf-1
Length = 851
Score = 43.2 bits (97), Expect = 0.002
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -3
Query: 234 EYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWN 109
++G+FYL+G+ YW + + QFGYN K +S G+S N
Sbjct: 522 KWGNFYLTGAWVDYWDKQEDTKQYQFGYNNTYKGVSYGLSAN 563
>UniRef50_Q6FFQ9 Cluster: Putative outer membrane usher protein;
n=1; Acinetobacter sp. ADP1|Rep: Putative outer membrane
usher protein - Acinetobacter sp. (strain ADP1)
Length = 869
Score = 42.7 bits (96), Expect = 0.003
Identities = 18/52 (34%), Positives = 32/52 (61%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSK 100
++SQQ G +GSFY++GS Q+Y ++D Q G++ I +S +++ K
Sbjct: 520 NLSQQFGRFGSFYVAGSTQSYRDERKRDTAFQAGFSKSIGIMSFNLNYTRQK 571
>UniRef50_A0IPA4 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=6; Enterobacteriaceae|Rep: Fimbrial
biogenesis outer membrane usher protein precursor -
Serratia proteamaculans 568
Length = 871
Score = 42.7 bits (96), Expect = 0.003
Identities = 18/52 (34%), Positives = 32/52 (61%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
I+Q++ + Y + S Q+YW QDR +Q G+N+ K++S G+ + S+S
Sbjct: 531 INQRIAGNSTLYTNVSNQSYWGGSGQDRTVQTGFNSSYKNISYGVFYQDSRS 582
>UniRef50_Q1LQW6 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=1; Ralstonia metallidurans
CH34|Rep: Fimbrial biogenesis outer membrane usher
protein precursor - Ralstonia metallidurans (strain CH34
/ ATCC 43123 / DSM 2839)
Length = 852
Score = 42.3 bits (95), Expect = 0.004
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = -3
Query: 252 ISQQLGE-YGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSR 94
++Q LG+ +G+FYL+G+ YW+ + Q GY+ ++ L L +++N + SR
Sbjct: 507 LNQSLGDRWGNFYLTGTSAEYWNRGGTALMFQVGYSNSLRVLGLPMTYNIAASR 560
>UniRef50_Q62KN8 Cluster: Outer membrane usher protein; n=15;
Burkholderia|Rep: Outer membrane usher protein -
Burkholderia mallei (Pseudomonas mallei)
Length = 850
Score = 41.9 bits (94), Expect = 0.005
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = -3
Query: 258 GHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDA 79
G ++Q+LG GS Y + + QTYW + + + Q G++ S G+ YSK G P +
Sbjct: 505 GTVNQRLGRLGSMYATVAVQTYWGSAARSTVYQLGHSGNWGRASYGLYAAYSKGSGVPSS 564
>UniRef50_Q9HWU4 Cluster: Usher CupB3; n=9; Proteobacteria|Rep:
Usher CupB3 - Pseudomonas aeruginosa
Length = 844
Score = 41.5 bits (93), Expect = 0.006
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGIS 115
+ISQQLG G+ YL+GS Q YW + GY+ +D+S IS
Sbjct: 490 NISQQLGNGGNLYLNGSSQRYWSGGGRAVNFSVGYSNQWRDVSYSIS 536
>UniRef50_A5W749 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=7; Pseudomonas|Rep: Fimbrial
biogenesis outer membrane usher protein precursor -
Pseudomonas putida F1
Length = 857
Score = 41.5 bits (93), Expect = 0.006
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = -3
Query: 246 QQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDA 79
Q +G+ S L+ SQ+ YW +D Q R Q YNT + DL + + + S S D+
Sbjct: 509 QTMGQSSSLSLTLSQEDYWRSDYQRRQFQLQYNTRLGDLGVNLFASQSLSERNTDS 564
>UniRef50_A4TLG2 Cluster: Outer membrane usher protein precursor;
n=11; Yersinia|Rep: Outer membrane usher protein
precursor - Yersinia pestis (strain Pestoides F)
Length = 870
Score = 41.5 bits (93), Expect = 0.006
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 252 ISQQLGE-YGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDAD 76
I+Q L + YGSFY + + Q YW +D QFGY K LS ++ N + R P D
Sbjct: 526 IAQGLPDGYGSFYANANVQDYWDGRNRDMNFQFGYTNSYKSLSYNVALN--RLRDIPSGD 583
>UniRef50_A0IJZ5 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=7; Enterobacteriaceae|Rep: Fimbrial
biogenesis outer membrane usher protein precursor -
Serratia proteamaculans 568
Length = 840
Score = 41.5 bits (93), Expect = 0.006
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = -3
Query: 252 ISQQLGEYG-SFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQP 85
+SQQL + G S LS ++ YW++D+ L GY+ + +S G++W+Y+++ P
Sbjct: 499 MSQQLWQDGGSLSLSAIREDYWNSDRSMASLGLGYSNSWQGISYGVNWSYNRNSFGP 555
>UniRef50_UPI00005F9B12 Cluster: COG3188: P pilus assembly protein,
porin PapC; n=2; Yersinia|Rep: COG3188: P pilus assembly
protein, porin PapC - Yersinia frederiksenii ATCC 33641
Length = 824
Score = 41.1 bits (92), Expect = 0.008
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRG 91
+SQ +G+ GS Y+SG + YW + + L GY+ ++ G++++ + +G
Sbjct: 477 LSQNMGDLGSLYISGMRDNYWDNGKVNNNLTAGYSNSYHGVTYGMNYSIDRIKG 530
>UniRef50_Q5PFZ4 Cluster: Outer membrane fimbrial usher protein;
n=6; Enterobacteriaceae|Rep: Outer membrane fimbrial
usher protein - Salmonella paratyphi-a
Length = 853
Score = 41.1 bits (92), Expect = 0.008
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = -3
Query: 282 LHQTWQTAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYS 103
LHQ + + +SQ LG G+ LS S Y++ + LQ GY+ +++S G+ N +
Sbjct: 483 LHQRNRLSATVSQPLGRLGTLNLSASTADYYNNQSRITQLQMGYSNQWRNISYGV--NIA 540
Query: 102 KSRGQPDADQVF 67
+ R D D+ +
Sbjct: 541 RQRTTWDYDRFY 552
>UniRef50_Q2L055 Cluster: Outer membrane fimbrial usher protein
precursor; n=2; Bordetella avium|Rep: Outer membrane
fimbrial usher protein precursor - Bordetella avium
(strain 197N)
Length = 839
Score = 40.7 bits (91), Expect = 0.011
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIK--DLSLGISWNYSKSRGQ 88
++Q LG YGS YLSGS + YW + + Y T I LSL S N GQ
Sbjct: 507 LNQPLGRYGSLYLSGSVRDYWGSSARRMQWTLNYGTQINGVGLSLEASTNSGSKYGQ 563
>UniRef50_A1HFZ5 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=4; Ralstonia pickettii|Rep:
Fimbrial biogenesis outer membrane usher protein
precursor - Ralstonia pickettii 12J
Length = 875
Score = 40.7 bits (91), Expect = 0.011
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -3
Query: 249 SQQLG----EYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGIS 115
SQ LG +YGS YL+ SQQT+W+ R + GY K LS +S
Sbjct: 539 SQDLGGIERQYGSVYLNVSQQTFWNQPGSSRSISLGYGNNWKQLSYNLS 587
>UniRef50_A1RPW6 Cluster: Fimbrial biogenesis outer membrane usher
protein; n=2; Shewanella|Rep: Fimbrial biogenesis outer
membrane usher protein - Shewanella sp. (strain W3-18-1)
Length = 839
Score = 40.3 bits (90), Expect = 0.015
Identities = 17/48 (35%), Positives = 31/48 (64%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWN 109
++Q L ++G YLSGS++ Y D LQFGY+ I +++G++++
Sbjct: 482 VNQSLDDFGFVYLSGSKRQYRDGRDDDDQLQFGYSVGIGRVNIGLTFS 529
>UniRef50_UPI00015C61E6 Cluster: hypothetical protein CKO_04363;
n=1; Citrobacter koseri ATCC BAA-895|Rep: hypothetical
protein CKO_04363 - Citrobacter koseri ATCC BAA-895
Length = 615
Score = 39.9 bits (89), Expect = 0.019
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGY 151
ISQ + YGS +LSG +QTYW ++Q +Q GY
Sbjct: 522 ISQPVWRYGSVWLSGVRQTYWKSNQSRDSVQIGY 555
>UniRef50_Q7AFL4 Cluster: Putative outer membrane usher protein;
n=2; Escherichia coli O157:H7|Rep: Putative outer
membrane usher protein - Escherichia coli O157:H7
Length = 840
Score = 39.5 bits (88), Expect = 0.025
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSR 94
+SQ L YG+ ++SGS Q Y +D LQ GY+ S GIS N S R
Sbjct: 498 LSQSLANYGNLFVSGSTQNYRGGKSRDTQLQLGYS---NSFSHGISMNLSVGR 547
>UniRef50_A0THS4 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=1; Burkholderia ambifaria
MC40-6|Rep: Fimbrial biogenesis outer membrane usher
protein precursor - Burkholderia ambifaria MC40-6
Length = 887
Score = 39.5 bits (88), Expect = 0.025
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDAD 76
+ISQ++G GS YL GS Q YW++ D Q GY+ K S +S +++
Sbjct: 521 NISQKIGS-GSVYLMGSAQDYWNSTGSDLQFQIGYSNSAKWGSYSLSAQRTRNAYGHQDT 579
Query: 75 QVFA 64
Q FA
Sbjct: 580 QYFA 583
>UniRef50_A7ME55 Cluster: Putative uncharacterized protein; n=1;
Enterobacter sakazakii ATCC BAA-894|Rep: Putative
uncharacterized protein - Enterobacter sakazakii ATCC
BAA-894
Length = 846
Score = 39.1 bits (87), Expect = 0.034
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPD 82
ISQ L GSFYL+G Q+ +W+ +++ L G+ + +S ++K++ Q D
Sbjct: 507 ISQTLDSMGSFYLNGYQRDFWNRTDKEQNLSTGFAFSAAGATWSLSATWNKTQEQTD 563
>UniRef50_A4Y249 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=2; Shewanella putrefaciens|Rep:
Fimbrial biogenesis outer membrane usher protein
precursor - Shewanella putrefaciens CN-32
Length = 850
Score = 38.7 bits (86), Expect = 0.045
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSK 100
+SQ LG++GS +SGS++ Y D Q GY+ +SLG+ NYS+
Sbjct: 501 MSQHLGDWGSLAVSGSKRQYRDGRDDDESYQMGYSNQFGLVSLGV--NYSR 549
>UniRef50_UPI00005F8BE3 Cluster: COG3188: P pilus assembly protein,
porin PapC; n=1; Yersinia frederiksenii ATCC 33641|Rep:
COG3188: P pilus assembly protein, porin PapC - Yersinia
frederiksenii ATCC 33641
Length = 868
Score = 38.3 bits (85), Expect = 0.059
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -3
Query: 255 HISQQLGE-YGSFYLSGSQQTYWHT-DQQDRLLQFGYNTXIK--DLSLGISWNYSKSRGQ 88
+ISQ L E YG+ +LSGS Q YWH Q GY + +++G+S S GQ
Sbjct: 526 NISQPLAEGYGNLFLSGSAQNYWHNGGGTSTTFQAGYGNSYRWGSINIGVSQTIG-SAGQ 584
Query: 87 PD 82
D
Sbjct: 585 SD 586
>UniRef50_Q9I4X5 Cluster: Usher CupC3; n=8; Proteobacteria|Rep:
Usher CupC3 - Pseudomonas aeruginosa
Length = 839
Score = 37.9 bits (84), Expect = 0.078
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRG 91
++Q L S YL+ + TYW+ R +QFG+++ IK S ++ + ++ G
Sbjct: 503 VNQTLFRRSSLYLTAGETTYWNRPGSSRRVQFGFSSGIKRASYSLAVSRTQETG 556
>UniRef50_Q8ZRR6 Cluster: Putativie fimbrial usher; n=2;
Salmonella|Rep: Putativie fimbrial usher - Salmonella
typhimurium
Length = 848
Score = 37.9 bits (84), Expect = 0.078
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -3
Query: 252 ISQQLGE-YGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDAD 76
++QQ+ GS LS ++ YWH+ QQ L YN +S +S++Y+K+ Q +D
Sbjct: 499 VNQQISNTLGSLTLSWVKEDYWHSAQQMESLSASYNNSWGPVSYTLSYSYNKNTYQYRSD 558
>UniRef50_Q7NYH8 Cluster: Outer membrane usher protein; n=1;
Chromobacterium violaceum|Rep: Outer membrane usher
protein - Chromobacterium violaceum
Length = 851
Score = 37.9 bits (84), Expect = 0.078
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 246 QQLGE-YGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGIS 115
Q LG+ G +L+GS Q YW+ +D Q GY+ K +SL +S
Sbjct: 520 QPLGDGRGHVFLTGSTQDYWNQKGRDLTYQLGYSNSFKSVSLNLS 564
>UniRef50_Q0HI10 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=1; Shewanella sp. MR-4|Rep:
Fimbrial biogenesis outer membrane usher protein
precursor - Shewanella sp. (strain MR-4)
Length = 819
Score = 37.5 bits (83), Expect = 0.10
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 231 YGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGIS 115
YG+ YLSG + +W+ R Q YN K LS G+S
Sbjct: 495 YGNLYLSGVFENFWNETNYSRQYQVSYNNQYKRLSWGVS 533
>UniRef50_A0GEL0 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=2; Burkholderia|Rep: Fimbrial
biogenesis outer membrane usher protein precursor -
Burkholderia phytofirmans PsJN
Length = 886
Score = 37.5 bits (83), Expect = 0.10
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDADQ 73
++Q +YG+ +L+ S Q YW+ + D Q GY K + I+ ++S +DQ
Sbjct: 532 LNQSFKKYGTVFLNASAQQYWNRNGSDVFYQAGYTKAFKSGTYSITAGRTRSSNGVMSDQ 591
Query: 72 V 70
+
Sbjct: 592 I 592
>UniRef50_UPI00005F9F29 Cluster: COG3188: P pilus assembly protein,
porin PapC; n=1; Yersinia intermedia ATCC 29909|Rep:
COG3188: P pilus assembly protein, porin PapC - Yersinia
intermedia ATCC 29909
Length = 832
Score = 37.1 bits (82), Expect = 0.14
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = -3
Query: 276 QTWQTAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
Q+ Q +SQ LGEYG Y SGS +Y +D Q Y+ IS+N S S
Sbjct: 472 QSNQFVATVSQGLGEYGQLYFSGSTSSYRSDRGRDTQYQMAYSHHYHT----ISYNLSLS 527
Query: 96 RGQ 88
R Q
Sbjct: 528 RQQ 530
>UniRef50_Q7N944 Cluster: Similar to outer membrane usher protein;
n=2; Enterobacteriaceae|Rep: Similar to outer membrane
usher protein - Photorhabdus luminescens subsp.
laumondii
Length = 824
Score = 36.7 bits (81), Expect = 0.18
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -3
Query: 291 QFVLHQTWQTAGHISQQLGEY-GSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGIS 115
Q+ HQ +++Q LG GS +LSG+ + YW T + R Q GY+ + ++ ++
Sbjct: 478 QYYSHQKNTFNINLNQNLGSRAGSLFLSGTFRNYWGTQNKSREYQMGYSNSLGKINYSLT 537
>UniRef50_Q47198 Cluster: Transmembrane protein; n=5; Escherichia
coli|Rep: Transmembrane protein - Escherichia coli
Length = 822
Score = 36.7 bits (81), Expect = 0.18
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 252 ISQQLGE-YGSFYLSGSQQTYW-HTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDA 79
++Q LGE +G+ YL+G+ YW HT + Q GYN K +S I ++ ++ G
Sbjct: 482 VNQSLGEGWGNLYLTGATYHYWGHTGTFNE-YQAGYNNVWKKMSYQIGFSQTRRSGDYHH 540
Query: 78 DQVF 67
D F
Sbjct: 541 DNRF 544
>UniRef50_A4TJY7 Cluster: Fimbrial usher protein precursor; n=13;
Yersinia|Rep: Fimbrial usher protein precursor -
Yersinia pestis (strain Pestoides F)
Length = 863
Score = 36.7 bits (81), Expect = 0.18
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGY-NTXIKDLSLGISWNYSKSRG 91
++Q YGS YL+ S Q Y +D LQ GY NT ++ S ++ + K+ G
Sbjct: 494 LNQNFHRYGSLYLTASSQDYRDDRSRDSQLQLGYSNTFWRNTSFNLAISQQKTGG 548
>UniRef50_P42915 Cluster: Uncharacterized outer membrane usher
protein yraJ precursor; n=14; Enterobacteriaceae|Rep:
Uncharacterized outer membrane usher protein yraJ
precursor - Escherichia coli (strain K12)
Length = 838
Score = 36.7 bits (81), Expect = 0.18
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSR 94
+ISQ + + S Y SGSQQ YW + ++R + G + + +G S NY SR
Sbjct: 503 NISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSG--QQWGVGYSLNYQYSR 554
>UniRef50_P45997 Cluster: Outer membrane usher protein hifC
precursor; n=15; Haemophilus|Rep: Outer membrane usher
protein hifC precursor - Haemophilus influenzae
Length = 837
Score = 36.7 bits (81), Expect = 0.18
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISWNYSKSRGQPD 82
+SQ LG +G+ YLSG YW + Q Y I + S+ +S + K G+ D
Sbjct: 504 LSQSLGNWGNLYLSGQTYNYWEKRGTNTQYQLAYANRFHILNYSINLSQSIDKETGKRD 562
>UniRef50_P46000 Cluster: Outer membrane usher protein fasD
precursor; n=5; Escherichia coli|Rep: Outer membrane
usher protein fasD precursor - Escherichia coli
Length = 835
Score = 36.7 bits (81), Expect = 0.18
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRG 91
++Q L +YGS L SQQ YW +D R ++ D+ S++ + G
Sbjct: 493 LNQSLDDYGSLSLIASQQNYWTSDYVSRSFSLSHSFGWNDIFFSTSFSLDQKEG 546
>UniRef50_Q7N9P7 Cluster: Similar to outer membrane usher protein;
n=2; Enterobacteriaceae|Rep: Similar to outer membrane
usher protein - Photorhabdus luminescens subsp.
laumondii
Length = 876
Score = 36.3 bits (80), Expect = 0.24
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -3
Query: 273 TWQTAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSR 94
+WQ +SQ L S +LSG + YW + + + L G N + G++++ + R
Sbjct: 519 SWQM--RLSQSLPGNYSLWLSGQRDNYWGSSKTNTTLSMGLNGSFYRVGWGLNYSIDRMR 576
Query: 93 GQPD 82
G D
Sbjct: 577 GNGD 580
>UniRef50_Q13L13 Cluster: Putative outer membrane fimbrial usher
porin; n=1; Burkholderia xenovorans LB400|Rep: Putative
outer membrane fimbrial usher porin - Burkholderia
xenovorans (strain LB400)
Length = 725
Score = 36.3 bits (80), Expect = 0.24
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = -3
Query: 252 ISQQLGEYG-SFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQ---- 88
++Q+LG G + Y+ GS YW+ D Q GY+ ++ +++ S SR +
Sbjct: 426 LNQRLGAAGGTLYVVGSTSDYWNRSGSDMQFQIGYSGALRVADANLNYTVSVSRQRTGLT 485
Query: 87 -PDADQVFA 64
P ++QVFA
Sbjct: 486 GPMSNQVFA 494
>UniRef50_P33129 Cluster: Outer membrane usher protein htrE
precursor; n=20; Enterobacteriaceae|Rep: Outer membrane
usher protein htrE precursor - Escherichia coli (strain
K12)
Length = 865
Score = 35.5 bits (78), Expect = 0.42
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = -3
Query: 234 EYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDADQVF 67
+YGSFYLSGS YW + Q GY+ S +S S + D V+
Sbjct: 520 DYGSFYLSGSWSDYWASGQNRSNYSIGYSNSTSWGSYSVSAQRSWNEDGDTDDSVY 575
>UniRef50_Q8XU09 Cluster: Sensor protein; n=8; Burkholderiaceae|Rep:
Sensor protein - Ralstonia solanacearum (Pseudomonas
solanacearum)
Length = 937
Score = 35.1 bits (77), Expect = 0.55
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +3
Query: 345 DGPLFERVLINLLENAVKYA 404
DGPL ERVL NLLENA K+A
Sbjct: 813 DGPLMERVLSNLLENAGKFA 832
>UniRef50_Q392X5 Cluster: Sensor protein; n=1; Burkholderia sp.
383|Rep: Sensor protein - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 568
Score = 34.7 bits (76), Expect = 0.73
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +3
Query: 342 VDGPLFERVLINLLENAVKYAG 407
VD L ERVL+NLL+NA KYAG
Sbjct: 448 VDALLIERVLMNLLDNASKYAG 469
>UniRef50_P15484 Cluster: Outer membrane usher protein CS3-2; n=5;
Escherichia coli|Rep: Outer membrane usher protein CS3-2
- Escherichia coli
Length = 937
Score = 34.7 bits (76), Expect = 0.73
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXI 139
I+ LGE GS SG+ + YW Q R Y+T I
Sbjct: 397 INHSLGELGSLNFSGTWRNYWENKNQTRSYNLSYSTQI 434
>UniRef50_P53517 Cluster: Outer membrane usher protein afaC
precursor; n=11; Escherichia coli|Rep: Outer membrane
usher protein afaC precursor - Escherichia coli
Length = 859
Score = 34.7 bits (76), Expect = 0.73
Identities = 17/59 (28%), Positives = 33/59 (55%)
Frame = -3
Query: 267 QTAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRG 91
+T +SQ LG++G L+GS+ Y +D Y+T ++SL ++W+ +++ G
Sbjct: 507 RTTLSLSQSLGQWGYVGLNGSRDEYRDRPHRD-YFGASYSTSWNNISLSVNWSRNRNSG 564
>UniRef50_Q4AGX7 Cluster: Sensor protein; n=1; Chlorobium
phaeobacteroides BS1|Rep: Sensor protein - Chlorobium
phaeobacteroides BS1
Length = 390
Score = 33.9 bits (74), Expect = 1.3
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 210 HLNKTNRTRLIAGRYDLQFATFGVKQIVITR--PHRRIFIITVIKFVDGPLFERVLINLL 383
HL + N T L+ Y + T K I + P + IT DG F+++LINLL
Sbjct: 96 HLEQNNLTTLLKETYGMFSLTVKQKGIDLHLDIPQPEVLHITT----DGSRFKQILINLL 151
Query: 384 ENAVKY 401
NA+K+
Sbjct: 152 SNAIKF 157
>UniRef50_Q63P53 Cluster: Outer membrane usher protein; n=15;
Burkholderia|Rep: Outer membrane usher protein -
Burkholderia pseudomallei (Pseudomonas pseudomallei)
Length = 877
Score = 33.5 bits (73), Expect = 1.7
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDAD 76
+++Q++G+ S Y+S S YW +D Q G+++ K +S + S+S
Sbjct: 511 NVNQRIGDRSSAYVSSSLLNYWDGRGRDIQFQAGFSSVFKRVSYTVYAQRSRSSDDRTVT 570
Query: 75 QV 70
QV
Sbjct: 571 QV 572
>UniRef50_A6TH60 Cluster: Putative fimbrial biogenesis outer
membrane usher protein; n=1; Klebsiella pneumoniae
subsp. pneumoniae MGH 78578|Rep: Putative fimbrial
biogenesis outer membrane usher protein - Klebsiella
pneumoniae subsp. pneumoniae MGH 78578
Length = 830
Score = 33.5 bits (73), Expect = 1.7
Identities = 13/52 (25%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -3
Query: 252 ISQQLGE-YGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSK 100
++Q LG+ GS +SG + YW + ++ + GYN ++++ + ++Y++
Sbjct: 485 VNQSLGKGLGSLSISGLIEDYWDDKRTNKSISVGYNGGFRNVNYYLGYSYNR 536
>UniRef50_A0IM58 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=2; Enterobacteriaceae|Rep: Fimbrial
biogenesis outer membrane usher protein precursor -
Serratia proteamaculans 568
Length = 836
Score = 33.5 bits (73), Expect = 1.7
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 252 ISQQLGE-YGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKSRGQPDAD 76
++Q+LG+ G+ + SG+Q+ YW R Q GY+ + +N S SR + D+
Sbjct: 507 LNQRLGDSLGTLFFSGTQRDYWTEQGNSREYQLGYSNNFGK----VDYNLSASRVRNDSH 562
Query: 75 Q 73
+
Sbjct: 563 E 563
>UniRef50_Q8Y3Z9 Cluster: Sensor protein; n=15; Firmicutes|Rep:
Sensor protein - Listeria monocytogenes
Length = 896
Score = 33.1 bits (72), Expect = 2.2
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +3
Query: 342 VDGPLFERVLINLLENAVKYAG 407
+DG L E+VLINL+ENA+++ G
Sbjct: 780 MDGTLIEQVLINLMENALRHGG 801
>UniRef50_Q6MM82 Cluster: Two-component sensor KdpD precursor; n=1;
Bdellovibrio bacteriovorus|Rep: Two-component sensor
KdpD precursor - Bdellovibrio bacteriovorus
Length = 223
Score = 33.1 bits (72), Expect = 2.2
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3
Query: 342 VDGPLFERVLINLLENAVKYA 404
+D LFE VL+NLL NAV+YA
Sbjct: 104 IDEKLFEHVLLNLLSNAVRYA 124
>UniRef50_Q1Z632 Cluster: Sensor protein; n=3; Vibrionaceae|Rep:
Sensor protein - Photobacterium profundum 3TCK
Length = 497
Score = 33.1 bits (72), Expect = 2.2
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 285 QIVITRPHRRIFIITVIKFVDGPLFERVLINLLENAVKYA 404
+I+I + RI I ++ VD L E V NL+ENA KY+
Sbjct: 360 EIIINKHSFRIDIPPMLIEVDSALLEHVFANLVENAAKYS 399
>UniRef50_A2DZB0 Cluster: TPR Domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: TPR Domain containing
protein - Trichomonas vaginalis G3
Length = 431
Score = 33.1 bits (72), Expect = 2.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 282 LHQTWQTAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGY 151
L+Q W T GH LG++ + Y S + H + D LL + Y
Sbjct: 80 LYQNWITLGHCYLILGDFPNAYASYAYSFELHPENNDPLLAYAY 123
>UniRef50_Q7W533 Cluster: Sensor protein; n=5; Burkholderiales|Rep:
Sensor protein - Bordetella parapertussis
Length = 931
Score = 32.7 bits (71), Expect = 2.9
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +3
Query: 345 DGPLFERVLINLLENAVKY 401
DG L ERVL NLLENA KY
Sbjct: 812 DGILIERVLCNLLENAAKY 830
>UniRef50_Q1CWY7 Cluster: Sensor protein; n=1; Myxococcus xanthus DK
1622|Rep: Sensor protein - Myxococcus xanthus (strain DK
1622)
Length = 411
Score = 32.7 bits (71), Expect = 2.9
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Frame = +3
Query: 177 VDPYASKFAGYHLNKTNRTRLIAGRYDLQFATFGVKQIV--ITRPHRRIFI---ITVIKF 341
+D S+ G + +RL AGR L+ + Q+V + F T+
Sbjct: 223 LDRQLSRLVGLVNTLLDVSRLAAGRLSLEPRELDLAQMVRQMAEAFSEEFTRAGSTLSLH 282
Query: 342 VDGPLF--------ERVLINLLENAVKYAG 407
VDGPL E+VL+NLL NAVKY G
Sbjct: 283 VDGPLLGEWDSLRLEQVLVNLLSNAVKYGG 312
>UniRef50_A0ZA61 Cluster: Sensor protein; n=1; Nodularia spumigena
CCY 9414|Rep: Sensor protein - Nodularia spumigena CCY
9414
Length = 1045
Score = 32.7 bits (71), Expect = 2.9
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 330 VIKFVDGPLFERVLINLLENAVKYA 404
VI VD L ++LINLL NAVKY+
Sbjct: 924 VIALVDKKLLRQILINLLSNAVKYS 948
>UniRef50_A6TGZ4 Cluster: Putative outer membrane usher protein;
n=1; Klebsiella pneumoniae subsp. pneumoniae MGH
78578|Rep: Putative outer membrane usher protein -
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Length = 741
Score = 32.3 bits (70), Expect = 3.9
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = -3
Query: 252 ISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
+SQ L YGS LS +TYW + + + + GY+ I S I+++Y+++
Sbjct: 400 LSQTLFGYGSLSLSLVNETYWDSSRMES-VGVGYSGSIGKASYFINYSYNRN 450
>UniRef50_P21647 Cluster: Outer membrane usher protein mrkC
precursor; n=3; Enterobacteriaceae|Rep: Outer membrane
usher protein mrkC precursor - Klebsiella pneumoniae
Length = 828
Score = 32.3 bits (70), Expect = 3.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 252 ISQQLGE-YGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGI 118
++Q L + +G FYL G YW+ ++ QF YN LS +
Sbjct: 502 VNQNLPDGWGGFYLCGRVADYWNRSGTEKQYQFSYNNMYGRLSWSV 547
>UniRef50_Q1LMT0 Cluster: Fimbrial biogenesis outer membrane usher
protein precursor; n=2; Burkholderiaceae|Rep: Fimbrial
biogenesis outer membrane usher protein precursor -
Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM
2839)
Length = 929
Score = 31.9 bits (69), Expect = 5.1
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -3
Query: 279 HQTWQTAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGIS 115
+Q Q + +Q L ++GS LS S +++ + +D Q YN + +S +S
Sbjct: 538 NQRDQFTVNANQNLNQFGSLSLSASTSSFYGSRSRDTQFQLSYNNHYRRISYNLS 592
>UniRef50_A5FWF2 Cluster: Sensor protein; n=2; Acidiphilium cryptum
JF-5|Rep: Sensor protein - Acidiphilium cryptum (strain
JF-5)
Length = 867
Score = 31.9 bits (69), Expect = 5.1
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +3
Query: 345 DGPLFERVLINLLENAVKY 401
D L E+VL+NLLENAVKY
Sbjct: 751 DPALLEQVLVNLLENAVKY 769
>UniRef50_Q893L4 Cluster: Sensor protein; n=1; Clostridium
tetani|Rep: Sensor protein - Clostridium tetani
Length = 303
Score = 31.5 bits (68), Expect = 6.8
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +3
Query: 210 HLNKTNRTRLIAGRYDLQFATFGVKQI--VITRPHRRIFIITVIKFVDGPLFERVLINLL 383
++ K N + +I L + F K+I VI P + I+++ D ERVL NL+
Sbjct: 151 NIKKINLSEIIRQSIILFYNDFNNKEIEPVIDLPSKEIYVMA-----DKIAVERVLNNLI 205
Query: 384 ENAVKY 401
NA+KY
Sbjct: 206 SNAIKY 211
>UniRef50_Q6N5H3 Cluster: Sensor protein; n=16;
Alphaproteobacteria|Rep: Sensor protein -
Rhodopseudomonas palustris
Length = 907
Score = 31.5 bits (68), Expect = 6.8
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 342 VDGPLFERVLINLLENAVKYA 404
VD LFE+ L NLL+NA KYA
Sbjct: 786 VDPVLFEQALFNLLDNAAKYA 806
>UniRef50_P72936 Cluster: Sensor protein; n=1; Synechocystis sp. PCC
6803|Rep: Sensor protein - Synechocystis sp. (strain PCC
6803)
Length = 380
Score = 31.5 bits (68), Expect = 6.8
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +3
Query: 342 VDGPLFERVLINLLENAVKYA 404
+D P+F+R++ NLL NA+K++
Sbjct: 248 IDPPIFQRIISNLLSNAIKFS 268
>UniRef50_A7H7D5 Cluster: PAS/PAC sensor signal transduction
histidine kinase; n=2; Anaeromyxobacter|Rep: PAS/PAC
sensor signal transduction histidine kinase -
Anaeromyxobacter sp. Fw109-5
Length = 377
Score = 31.5 bits (68), Expect = 6.8
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 345 DGPLFERVLINLLENAVKYAG 407
D E+VL+NLL+NAVKY G
Sbjct: 269 DARALEQVLVNLLDNAVKYTG 289
>UniRef50_A6EHZ5 Cluster: Sensor protein; n=1; Pedobacter sp.
BAL39|Rep: Sensor protein - Pedobacter sp. BAL39
Length = 1300
Score = 31.5 bits (68), Expect = 6.8
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 324 ITVIKFVDGPLFERVLINLLENAVKYA 404
+T+ +VD F+++LINL+ NA KYA
Sbjct: 903 LTLHAYVDIEAFKKILINLISNAFKYA 929
>UniRef50_Q7NXN0 Cluster: Sensor protein; n=2; Bacteria|Rep: Sensor
protein - Chromobacterium violaceum
Length = 895
Score = 31.1 bits (67), Expect = 8.9
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 345 DGPLFERVLINLLENAVKY 401
D L ERVL+NLLENA KY
Sbjct: 777 DAVLIERVLVNLLENAGKY 795
>UniRef50_Q5NQA1 Cluster: Sensor protein; n=1; Zymomonas
mobilis|Rep: Sensor protein - Zymomonas mobilis
Length = 763
Score = 31.1 bits (67), Expect = 8.9
Identities = 15/24 (62%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
Frame = +3
Query: 339 FVDGP--LFERVLINLLENAVKYA 404
FV+G L ERV INL++NAVKY+
Sbjct: 645 FVEGDPALLERVFINLIDNAVKYS 668
>UniRef50_Q47A44 Cluster: Sensor protein; n=1; Dechloromonas
aromatica RCB|Rep: Sensor protein - Dechloromonas
aromatica (strain RCB)
Length = 512
Score = 31.1 bits (67), Expect = 8.9
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +3
Query: 345 DGPLFERVLINLLENAVKYA 404
D L ERVL NLLENA KY+
Sbjct: 394 DAVLIERVLCNLLENAAKYS 413
>UniRef50_Q4IX66 Cluster: ATP-binding region, ATPase-like:Histidine
kinase A, N-terminal precursor; n=1; Azotobacter
vinelandii AvOP|Rep: ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal precursor -
Azotobacter vinelandii AvOP
Length = 488
Score = 31.1 bits (67), Expect = 8.9
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3
Query: 345 DGPLFERVLINLLENAVKYA 404
D L ERVL NLLENA+KY+
Sbjct: 368 DAVLVERVLWNLLENAIKYS 387
>UniRef50_Q1K1W8 Cluster: Multi-sensor signal transduction histidine
kinase precursor; n=1; Desulfuromonas acetoxidans DSM
684|Rep: Multi-sensor signal transduction histidine
kinase precursor - Desulfuromonas acetoxidans DSM 684
Length = 595
Score = 31.1 bits (67), Expect = 8.9
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 342 VDGPLFERVLINLLENAVKYA 404
++ PL E+ L NLLENA+KY+
Sbjct: 483 LNAPLLEQALTNLLENAIKYS 503
>UniRef50_Q09E75 Cluster: Sensor protein; n=3; Bacteria|Rep: Sensor
protein - Stigmatella aurantiaca DW4/3-1
Length = 1991
Score = 31.1 bits (67), Expect = 8.9
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 339 FVDGPLFERVLINLLENAVKY 401
+VD ++E+V++NLL NAVKY
Sbjct: 1447 YVDPEMWEKVVLNLLSNAVKY 1467
>UniRef50_A6X5I1 Cluster: Sensor protein; n=3; Rhizobiales|Rep:
Sensor protein - Ochrobactrum anthropi (strain ATCC
49188 / DSM 6882 / NCTC 12168)
Length = 912
Score = 31.1 bits (67), Expect = 8.9
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 342 VDGPLFERVLINLLENAVKYA 404
+D LFE+VL NL +NA KYA
Sbjct: 793 LDAVLFEQVLFNLFDNAAKYA 813
>UniRef50_A6EEB2 Cluster: Sensor protein; n=1; Pedobacter sp.
BAL39|Rep: Sensor protein - Pedobacter sp. BAL39
Length = 1616
Score = 31.1 bits (67), Expect = 8.9
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Frame = +3
Query: 231 TRLIAGRYDLQFATFGVKQIVI--------TRPHRRIF--IITVIKFVDGPLFERVLINL 380
T++ AG+ F+TF VK ++ T H + + V + D E+V+ N
Sbjct: 1446 TKIQAGKMQFNFSTFNVKTLIEECVDDLQNTEKHEVVIEQYVDVDAYADRHRIEQVVRNF 1505
Query: 381 LENAVKYA 404
L NA+KY+
Sbjct: 1506 LSNAIKYS 1513
>UniRef50_A0VDN8 Cluster: Sensor protein; n=3; Proteobacteria|Rep:
Sensor protein - Delftia acidovorans SPH-1
Length = 986
Score = 31.1 bits (67), Expect = 8.9
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 342 VDGPLFERVLINLLENAVKY 401
+D L ERVL+NLL+NA KY
Sbjct: 869 LDALLMERVLVNLLDNAAKY 888
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 392,904,858
Number of Sequences: 1657284
Number of extensions: 7393616
Number of successful extensions: 22190
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 21758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22180
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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