Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0368
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...    28   0.64 
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    26   2.6  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    25   3.4  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   6.0  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    24   7.9  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    24   7.9  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    24   7.9  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   7.9  

>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score = 27.9 bits (59), Expect = 0.64
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 177 VDPYASKFAGYHLNKTNRTRLIAGRYDLQFATFGVK 284
           V+ Y +K+   H+ K+NR  +   R  LQF   G++
Sbjct: 100 VEVYGAKYMSLHVRKSNRAAIHLYRDTLQFDVQGIE 135


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 332 DGDDEDTPMWSRYYNLFYTK 273
           DGD+E   +W+R+ +L  TK
Sbjct: 269 DGDEESLKVWARFRDLSITK 288


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 183 DQQDRLLQFGYNTXIKDLS 127
           D+ D +L FGYN  +K LS
Sbjct: 171 DEADLMLSFGYNEDMKTLS 189


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 389  VLQQINQHPFKEWPVNEFNDGDDEDT 312
            V+QQ   H   E+P  +FN+ DD+++
Sbjct: 938  VVQQATPHIQDEFPPIQFNEIDDDES 963


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 368 HPFKEWPVNEFNDGDDEDTPMWSRYYNLF 282
           HP+ +       D D+ DT MW  YYN F
Sbjct: 120 HPYSKTSFPVSYDLDELDT-MWLTYYNEF 147


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 380 QINQHPFKEWPVN 342
           +++ HPFKEW +N
Sbjct: 266 EVSVHPFKEWLLN 278


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 395 HRVLQQINQHPFKEWPVNEFNDGDDEDTPMWSRYYNLFYTKRGKLQVISPSN 240
           HR++   + H +    + E NDG DE++   S  YN F+  +   QVI  S+
Sbjct: 544 HRMIDIYHGHGWASG-LFESNDGKDEEST--SEDYNFFFGMKLWGQVIGDSD 592


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 264 TAGHI-SQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGI 118
           ++GH  SQQ G   S+  S SQQ++ H  +  R  Q   N   ++++  I
Sbjct: 253 SSGHAPSQQGGNKHSYKKSDSQQSFHHKGRNTRKGQRHNNGFYRNIANNI 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,457
Number of Sequences: 5004
Number of extensions: 31117
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)