Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0368
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0148 - 22729469-22730116,22730215-22730589                       27   5.7  
09_02_0311 + 7164774-7166327                                           27   7.6  
07_03_1597 + 28016737-28016771,28016881-28017742                       27   7.6  
02_05_0327 + 27980841-27980972,27981673-27981763,27981848-279819...    27   7.6  

>05_05_0148 - 22729469-22730116,22730215-22730589
          Length = 340

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 87  VDHGTYCSSRKSPAKDL*FXCCSQTVIADPVDPYASKFA 203
           +DHG+YCSS  S +       C +T +AD       +FA
Sbjct: 200 IDHGSYCSSSSSSSPGRFQYACRKT-LADSRPRVQGRFA 237


>09_02_0311 + 7164774-7166327
          Length = 517

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 322 MKIRRCGRVITIC--FTPNVANCRSYLPAIRRVRFVLF 215
           +++R  G+ IT+        A  +++LP + R+RFVLF
Sbjct: 419 LEVRPAGQSITVAVNMAMTFAVAQAFLPLLCRLRFVLF 456


>07_03_1597 + 28016737-28016771,28016881-28017742
          Length = 298

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 236 ASTVRFI*VVASKLT--GIRINRIGYYSLATTRKLKIFRWGFPGTTVSPV 93
           A+ V  +  VA +L   G+R+N I  +++ T   + +F   FP  T   V
Sbjct: 188 AAVVGMVRTVARQLARDGVRVNAISPHAVPTPMAIGLFSETFPAATAEEV 237


>02_05_0327 +
           27980841-27980972,27981673-27981763,27981848-27981900,
           27981990-27982154,27982544-27982662,27982880-27982997,
           27983096-27983173,27983326-27983424
          Length = 284

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 319 KIRRCGRVITICFTPNVANC 260
           K+R  GRV TICF   +A C
Sbjct: 205 KLREVGRVATICFLCFLARC 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,393,254
Number of Sequences: 37544
Number of extensions: 198680
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)