Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0368
         (407 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46163| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_57593| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_19682| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_1036| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.6  
SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)                        28   2.6  
SB_26540| Best HMM Match : UBA (HMM E-Value=6.2)                       28   3.4  
SB_25636| Best HMM Match : UBA (HMM E-Value=6.9)                       28   3.4  
SB_24878| Best HMM Match : JTB (HMM E-Value=1.6)                       28   3.4  
SB_4458| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.4  
SB_50915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_42177| Best HMM Match : UBA (HMM E-Value=6.9)                       28   3.4  
SB_31340| Best HMM Match : DUF935 (HMM E-Value=0.19)                   28   3.4  
SB_35883| Best HMM Match : TolA (HMM E-Value=0.11)                     27   7.8  
SB_35793| Best HMM Match : rve (HMM E-Value=4.3)                       27   7.8  

>SB_46163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 219 YLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISWNY-SKSRGQPD 82
           Y+       WH+D  D+L  FG+  +  I   S  + W Y ++S   PD
Sbjct: 117 YICPGPNKVWHSDGYDKLKPFGFPVHGCIDGFSRKVMWLYVTRSNNLPD 165


>SB_57593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 219 YLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISWNY-SKSRGQPD 82
           Y+       WH+D  D+L  FG+  +  I   S  + W Y ++S   PD
Sbjct: 182 YICPGPNKVWHSDGYDKLKPFGFPVHGCIDGFSRKVMWLYVTRSNNLPD 230


>SB_19682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 219 YLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISWNY-SKSRGQPD 82
           Y+       WH+D  D+L  FG+  +  I   S  + W Y ++S   PD
Sbjct: 211 YICPGPNKVWHSDGYDKLRPFGFPVHGCIDGFSRKVMWLYVTRSNNLPD 259


>SB_1036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 219 YLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISWNY-SKSRGQPD 82
           Y S   ++ WH D  D+L  +G+  +  I   S  + W Y ++S   PD
Sbjct: 66  YRSLGPKSTWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNNYPD 114


>SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)
          Length = 427

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 219 YLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISWNY-SKSRGQPD 82
           Y S +  + WH D  D+L  +G+  +  I   S  + W Y ++S   PD
Sbjct: 328 YRSLAPNSTWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNNYPD 376


>SB_26540| Best HMM Match : UBA (HMM E-Value=6.2)
          Length = 207

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 219 YLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISWNY-SKSRGQPD 82
           Y S    + WH D  D+L  +G+  +  I   S  + W Y ++S   PD
Sbjct: 126 YRSLGPNSTWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNNYPD 174


>SB_25636| Best HMM Match : UBA (HMM E-Value=6.9)
          Length = 205

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 219 YLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISWNY-SKSRGQPD 82
           Y S    + WH D  D+L  +G+  +  I   S  + W Y ++S   PD
Sbjct: 126 YRSLGPNSTWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNNYPD 174


>SB_24878| Best HMM Match : JTB (HMM E-Value=1.6)
          Length = 603

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 219 YLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISWNY-SKSRGQPD 82
           Y S    + WH D  D+L  +G+  +  I   S  + W Y ++S   PD
Sbjct: 394 YRSLGPNSTWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNNYPD 442


>SB_4458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 219 YLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISWNY-SKSRGQPD 82
           Y S    + WH D  D+L  +G+  +  I   S  + W Y ++S   PD
Sbjct: 126 YRSLGPNSTWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNNYPD 174


>SB_50915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 219 YLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISWNY-SKSRGQPD 82
           Y S    + WH D  D+L  +G+  +  I   S  + W Y ++S   PD
Sbjct: 253 YRSLGPNSTWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNNYPD 301


>SB_42177| Best HMM Match : UBA (HMM E-Value=6.9)
          Length = 266

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 219 YLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISWNY-SKSRGQPD 82
           Y S    + WH D  D+L  +G+  +  I   S  + W Y ++S   PD
Sbjct: 189 YRSLGPNSTWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNNYPD 237


>SB_31340| Best HMM Match : DUF935 (HMM E-Value=0.19)
          Length = 339

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -3

Query: 219 YLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISWNY-SKSRGQPD 82
           Y S    + WH D  D+L  +G+  +  I   S  + W Y ++S   PD
Sbjct: 126 YRSLGPNSTWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNNYPD 174


>SB_35883| Best HMM Match : TolA (HMM E-Value=0.11)
          Length = 391

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 335 NDGDDEDTPMWSRYYNL---FYTKRGKLQVISPS 243
           +D DDED  +W +++ +   +  K G L  IS S
Sbjct: 244 SDSDDEDQELWDKFWGIHKDYQHKPGALNKISKS 277


>SB_35793| Best HMM Match : rve (HMM E-Value=4.3)
          Length = 193

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = -3

Query: 219 YLSGSQQTYWHTDQQDRLLQFGY--NTXIKDLSLGISW-NYSKSRGQPD 82
           Y S      WH D   +L  +G+  +  I   S  I W N +KS   PD
Sbjct: 70  YRSSGPNQIWHVDAYVKLKPYGFPIHGCIDGRSRRIMWLNVTKSSNNPD 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,139,968
Number of Sequences: 59808
Number of extensions: 235063
Number of successful extensions: 559
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)