Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0368
(407 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT003633-1|AAO39637.1| 359|Drosophila melanogaster AT24863p pro... 28 5.4
AY060905-1|AAL28453.1| 556|Drosophila melanogaster GM05229p pro... 28 5.4
AE013599-2185|AAM70948.2| 556|Drosophila melanogaster CG8421-PE... 28 5.4
AE013599-2184|AAF58064.2| 556|Drosophila melanogaster CG8421-PD... 28 5.4
BT021418-1|AAX33566.1| 901|Drosophila melanogaster LD04461p pro... 27 9.5
AY250782-1|AAP13277.1| 932|Drosophila melanogaster nucleoporin ... 27 9.5
AY250781-1|AAP13276.1| 932|Drosophila melanogaster nucleoporin ... 27 9.5
AY250780-1|AAP13275.1| 932|Drosophila melanogaster nucleoporin ... 27 9.5
AY250778-1|AAP13273.1| 932|Drosophila melanogaster nucleoporin ... 27 9.5
AY250777-1|AAP13272.1| 932|Drosophila melanogaster nucleoporin ... 27 9.5
AY250776-1|AAP13271.1| 932|Drosophila melanogaster nucleoporin ... 27 9.5
AY250775-1|AAP13270.1| 932|Drosophila melanogaster nucleoporin ... 27 9.5
AY250774-1|AAP13269.1| 932|Drosophila melanogaster nucleoporin ... 27 9.5
AY250771-1|AAP13265.1| 932|Drosophila melanogaster nucleoporin ... 27 9.5
AY061612-1|AAL29160.1| 969|Drosophila melanogaster SD07884p pro... 27 9.5
AY060300-1|AAL25339.1| 125|Drosophila melanogaster GH14228p pro... 27 9.5
AJ242723-1|CAB44307.1| 737|Drosophila melanogaster hypothetical... 27 9.5
AF145609-1|AAD38584.1| 974|Drosophila melanogaster BcDNA.GH0283... 27 9.5
AE014298-2568|AAO41693.1| 975|Drosophila melanogaster CG8611-PB... 27 9.5
AE014298-2567|AAF48727.2| 974|Drosophila melanogaster CG8611-PA... 27 9.5
AE014298-1652|AAF48069.1| 901|Drosophila melanogaster CG1703-PA... 27 9.5
AE014134-1510|AAF52676.1| 969|Drosophila melanogaster CG13400-P... 27 9.5
>BT003633-1|AAO39637.1| 359|Drosophila melanogaster AT24863p
protein.
Length = 359
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 350 PVNEFNDGDDEDTPMWSRYY 291
PV EF D D P W+R Y
Sbjct: 340 PVKEFESDPDSDDPSWTRNY 359
>AY060905-1|AAL28453.1| 556|Drosophila melanogaster GM05229p
protein.
Length = 556
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 350 PVNEFNDGDDEDTPMWSRYY 291
PV EF D D P W+R Y
Sbjct: 537 PVKEFESDPDSDDPSWTRNY 556
>AE013599-2185|AAM70948.2| 556|Drosophila melanogaster CG8421-PE,
isoform E protein.
Length = 556
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 350 PVNEFNDGDDEDTPMWSRYY 291
PV EF D D P W+R Y
Sbjct: 537 PVKEFESDPDSDDPSWTRNY 556
>AE013599-2184|AAF58064.2| 556|Drosophila melanogaster CG8421-PD,
isoform D protein.
Length = 556
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 350 PVNEFNDGDDEDTPMWSRYY 291
PV EF D D P W+R Y
Sbjct: 537 PVKEFESDPDSDDPSWTRNY 556
>BT021418-1|AAX33566.1| 901|Drosophila melanogaster LD04461p
protein.
Length = 901
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 374 NQHPFKEWPVNEFNDGDDEDTPMWSR 297
++ P K P N+ +D DD++ P+ S+
Sbjct: 96 DEKPEKSLPANDLDDEDDDEAPLASK 121
>AY250782-1|AAP13277.1| 932|Drosophila melanogaster nucleoporin
98-96 protein.
Length = 932
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
H+ QL + S + GS+ H D +L+ ++ +K + G+ +YS S
Sbjct: 344 HLEVQLNDCLSVNVEGSECPCIHPDSGTKLISKHFSESLKQRNAGLKEDYSVS 396
>AY250781-1|AAP13276.1| 932|Drosophila melanogaster nucleoporin
98-96 protein.
Length = 932
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
H+ QL + S + GS+ H D +L+ ++ +K + G+ +YS S
Sbjct: 344 HLEVQLNDCLSVNVEGSECPCIHPDSGTKLISKHFSESLKQRNAGLKEDYSVS 396
>AY250780-1|AAP13275.1| 932|Drosophila melanogaster nucleoporin
98-96 protein.
Length = 932
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
H+ QL + S + GS+ H D +L+ ++ +K + G+ +YS S
Sbjct: 344 HLEVQLNDCLSVNVEGSECPCIHPDSGTKLISKHFSESLKQRNAGLKEDYSVS 396
>AY250778-1|AAP13273.1| 932|Drosophila melanogaster nucleoporin
98-96 protein.
Length = 932
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
H+ QL + S + GS+ H D +L+ ++ +K + G+ +YS S
Sbjct: 344 HLEVQLNDCLSVNVEGSECPCIHPDSGTKLISKHFSESLKQRNAGLKEDYSVS 396
>AY250777-1|AAP13272.1| 932|Drosophila melanogaster nucleoporin
98-96 protein.
Length = 932
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
H+ QL + S + GS+ H D +L+ ++ +K + G+ +YS S
Sbjct: 344 HLEVQLNDCLSVNVEGSECPCIHPDSGTKLISKHFSESLKQRNAGLKEDYSVS 396
>AY250776-1|AAP13271.1| 932|Drosophila melanogaster nucleoporin
98-96 protein.
Length = 932
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
H+ QL + S + GS+ H D +L+ ++ +K + G+ +YS S
Sbjct: 344 HLEVQLNDCLSVNVEGSECPCIHPDSGTKLISKHFSESLKQRNAGLKEDYSVS 396
>AY250775-1|AAP13270.1| 932|Drosophila melanogaster nucleoporin
98-96 protein.
Length = 932
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
H+ QL + S + GS+ H D +L+ ++ +K + G+ +YS S
Sbjct: 344 HLEVQLNDCLSVNVEGSECPCIHPDSGTKLISKHFSESLKQRNAGLKEDYSVS 396
>AY250774-1|AAP13269.1| 932|Drosophila melanogaster nucleoporin
98-96 protein.
Length = 932
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
H+ QL + S + GS+ H D +L+ ++ +K + G+ +YS S
Sbjct: 344 HLEVQLNDCLSVNVEGSECPCIHPDSGTKLISKHFSESLKQRNAGLKEDYSVS 396
>AY250771-1|AAP13265.1| 932|Drosophila melanogaster nucleoporin
98-96 protein.
Length = 932
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
H+ QL + S + GS+ H D +L+ ++ +K + G+ +YS S
Sbjct: 344 HLEVQLNDCLSVNVEGSECPCIHPDSGTKLISKHFSESLKQRNAGLKEDYSVS 396
>AY061612-1|AAL29160.1| 969|Drosophila melanogaster SD07884p
protein.
Length = 969
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 267 QTAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKD 133
Q G QL Y S SG++ W T Q DRLL G++ ++D
Sbjct: 777 QLKGEPQPQLSAYSSLS-SGNRLEAWITKQSDRLL--GHDQKMRD 818
>AY060300-1|AAL25339.1| 125|Drosophila melanogaster GH14228p
protein.
Length = 125
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 255 HISQQLGEYGSFYLSGSQQTYWHTDQQ 175
H+ QL + G +L+ SQQ HT+QQ
Sbjct: 82 HLEDQLLQKGGHHLAKSQQHGGHTEQQ 108
>AJ242723-1|CAB44307.1| 737|Drosophila melanogaster hypothetical
protein protein.
Length = 737
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 267 QTAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKD 133
Q G QL Y S SG++ W T Q DRLL G++ ++D
Sbjct: 545 QLKGEPQPQLSAYSSLS-SGNRLEAWITKQSDRLL--GHDQQMRD 586
>AF145609-1|AAD38584.1| 974|Drosophila melanogaster BcDNA.GH02833
protein.
Length = 974
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 264 TAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDL 130
T G + L SF L+ Q + D+ DRLL+ GY +K L
Sbjct: 459 TPGRLVDHLLHTASFKLTKLQ--FLILDEADRLLELGYERDVKQL 501
>AE014298-2568|AAO41693.1| 975|Drosophila melanogaster CG8611-PB,
isoform B protein.
Length = 975
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 264 TAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDL 130
T G + L SF L+ Q + D+ DRLL+ GY +K L
Sbjct: 460 TPGRLVDHLLHTASFKLTKLQ--FLILDEADRLLELGYERDVKQL 502
>AE014298-2567|AAF48727.2| 974|Drosophila melanogaster CG8611-PA,
isoform A protein.
Length = 974
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 264 TAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDL 130
T G + L SF L+ Q + D+ DRLL+ GY +K L
Sbjct: 459 TPGRLVDHLLHTASFKLTKLQ--FLILDEADRLLELGYERDVKQL 501
>AE014298-1652|AAF48069.1| 901|Drosophila melanogaster CG1703-PA
protein.
Length = 901
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 374 NQHPFKEWPVNEFNDGDDEDTPMWSR 297
++ P K P N+ +D DD++ P+ S+
Sbjct: 96 DEKPEKSLPANDLDDEDDDEAPLASK 121
>AE014134-1510|AAF52676.1| 969|Drosophila melanogaster CG13400-PA
protein.
Length = 969
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 267 QTAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKD 133
Q G QL Y S SG++ W T Q DRLL G++ ++D
Sbjct: 777 QLKGEPQPQLSAYSSLS-SGNRLEAWITKQSDRLL--GHDQQMRD 818
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,413,184
Number of Sequences: 53049
Number of extensions: 334505
Number of successful extensions: 789
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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