Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0368
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    20   9.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    20   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 31   EQQIERQGKI*SKHLISIRLTTGLTVVPGNPQRKIFNXRVVAKL 162
            +QQ ++Q  I    L++I+   GL V+P     K     V A++
Sbjct: 1233 QQQTQQQPIILPSQLLNIKTLHGLKVIPTPAGLKTTGAAVYARV 1276


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 146 RKLKIFRWGFPGTTVSPVVNLM 81
           +KL++ RWG    TV+P + L+
Sbjct: 142 QKLRL-RWGTGAVTVNPELKLL 162


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 126 LGISWNYSKSRGQPDAD 76
           +GI WN +  R  P +D
Sbjct: 806 IGILWNMNNKRLDPKSD 822


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 182 INRIGYYSLATTRKLKIFRW 123
           I R+   S   T KLKI++W
Sbjct: 77  IIRMFLISQQKTSKLKIYKW 96


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 182 INRIGYYSLATTRKLKIFRW 123
           I R+   S   T KLKI++W
Sbjct: 60  IIRMFLISQQKTSKLKIYKW 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,708
Number of Sequences: 438
Number of extensions: 2119
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)