Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0368
         (407 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60870.2 68418.m07635 regulator of chromosome condensation (R...    31   0.39 
At5g60870.1 68418.m07636 regulator of chromosome condensation (R...    31   0.39 
At4g04770.1 68417.m00699 ATP-binding-cassette transporter (ABC1)...    29   0.91 
At4g25480.1 68417.m03669 DRE-binding protein (DREB1A) / CRT/DRE-...    28   2.8  
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa...    27   4.8  
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa...    27   4.8  

>At5g60870.2 68418.m07635 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 383

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -1

Query: 197 LTGIRINRI---GYYSLATTRKLKIFRWGFPG 111
           L G+RI +I   GY+SLA T + K+  WG  G
Sbjct: 242 LEGVRITQIACGGYHSLALTEEGKVLSWGHGG 273


>At5g60870.1 68418.m07636 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 445

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -1

Query: 197 LTGIRINRI---GYYSLATTRKLKIFRWGFPG 111
           L G+RI +I   GY+SLA T + K+  WG  G
Sbjct: 311 LEGVRITQIACGGYHSLALTEEGKVLSWGHGG 342


>At4g04770.1 68417.m00699 ATP-binding-cassette transporter (ABC1)
           Identical to the protein described in PMID:11156608 and
           note that sequence was not deposited into GenBank by the
           authors.
          Length = 557

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -3

Query: 273 TWQTAGHISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTXIKDLSLGISWNYSKS 97
           TW+    + +     G FY       Y   D   +++  G NT  + +S GIS  +S++
Sbjct: 388 TWKYPSVVLEGDDSVGEFYSVALTNNYQQADTGTKMIHKGKNTKSRIISKGISAGHSRN 446


>At4g25480.1 68417.m03669 DRE-binding protein (DREB1A) /
           CRT/DRE-binding factor 3 (CBF3) identical to DREB1A
           GI:3738224 from [Arabidopsis thaliana], DREB1A
           [Arabidopsis thaliana] GI:3660548, CRT/DRE binding
           factor 3 [Arabidopsis thaliana] GI:4091983; contains
           Pfam profile PF00847: AP2 domain; identical to cDNA
           CRT/DRE binding factor 3 (CBF3) GI:4322229
          Length = 216

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 365 PFKEWPVNEFNDGDDEDTPMWS 300
           P  +W  N   DGDD+D  +WS
Sbjct: 194 PSVQWNHNHEVDGDDDDVSLWS 215


>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 885

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 338 FNDGDDEDTPMWS 300
           FND D+ DTP+WS
Sbjct: 659 FNDDDEFDTPLWS 671


>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 873

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 338 FNDGDDEDTPMWS 300
           FND D+ DTP+WS
Sbjct: 659 FNDDDEFDTPLWS 671


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,360,089
Number of Sequences: 28952
Number of extensions: 159615
Number of successful extensions: 360
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)