Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0367
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF251126-1|AAF71273.1|  487|Caenorhabditis elegans UDP-GlcNAc:a-...    31   1.1  
U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AC024799-2|AAK72317.3|  328|Caenorhabditis elegans Serpentine re...    28   5.8  

>Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.16 protein.
          Length = 279

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
 Frame = +3

Query: 78  ISIVKELFHYHSYILIYLSEKNTNFGNRTTVCSKIIIMFSNVTIRSCSRFSVFLFWSPFI 257
           I   + +FH + Y+L      +T F  +     ++++++  +    C  F+V +  S F+
Sbjct: 13  ILFAQTVFHINLYLLF-----STFFTKKVCYRPELLLIYCKIAADICYSFTVSIMKSYFL 67

Query: 258 ---CFTHLRSHGPFDQIDTTH*CYPMV--TYCDSQSIQCLISMFYPYISPNNLEILSI*W 422
              C+ HL        +  T     ++  T+    +++  IS+F+P    NN   +   W
Sbjct: 68  VILCYKHLAVKNLSIYMLETSVTMGIIKGTFAFMITLERFISVFFPIHYRNNRRKIPFYW 127

Query: 423 VIV 431
           +I+
Sbjct: 128 III 130


>Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical
           protein C03E10.4 protein.
          Length = 487

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 533 NLTNGRVLTMFYPYNFEFFCTVTGAYRP 616
           N+T  RV  +FYPYN + F TV     P
Sbjct: 173 NITFARVYQIFYPYNLQLFPTVFPGQSP 200


>AF251126-1|AAF71273.1|  487|Caenorhabditis elegans
           UDP-GlcNAc:a-6-D-mannoside
           b1,2-N-acetylglucosaminyltransferase II protein.
          Length = 487

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 533 NLTNGRVLTMFYPYNFEFFCTVTGAYRP 616
           N+T  RV  +FYPYN + F TV     P
Sbjct: 173 NITFARVYQIFYPYNLQLFPTVFPGQSP 200


>U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical
           protein F35H12.2a protein.
          Length = 930

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = +3

Query: 177 KIIIMFSNVTIRSCSRFSVFLFWSPF--ICFTHLRSHGPFDQIDTTH*CYPMVTYCDSQS 350
           K++  FS V IR C R       +    I FTH  S G  +  D  H C+   T     +
Sbjct: 71  KVLSSFSLVNIRFCIRGESSTSQNNCFGISFTHKISVGEHNSSDILHQCHVFRTSKAETA 130

Query: 351 IQCLISMFYPYISPN 395
            + L S  Y + + N
Sbjct: 131 AKALYSFSYAFSNKN 145


>U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical
           protein F35H12.2b protein.
          Length = 934

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = +3

Query: 177 KIIIMFSNVTIRSCSRFSVFLFWSPF--ICFTHLRSHGPFDQIDTTH*CYPMVTYCDSQS 350
           K++  FS V IR C R       +    I FTH  S G  +  D  H C+   T     +
Sbjct: 71  KVLSSFSLVNIRFCIRGESSTSQNNCFGISFTHKISVGEHNSSDILHQCHVFRTSKAETA 130

Query: 351 IQCLISMFYPYISPN 395
            + L S  Y + + N
Sbjct: 131 AKALYSFSYAFSNKN 145


>AC024799-2|AAK72317.3|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein53 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
 Frame = +3

Query: 114 YILIYLSEKNTNFGN-RTTVCSKIIIMFSNVTIRSCSRFSVFLFWSPFICFTHLRSHGPF 290
           ++ +  SEK+ NFGN R  + S  +       +       +  +   + CF  +R HGPF
Sbjct: 25  FVYLIFSEKSANFGNYRFLLLSFAVFNLIYSVVNVLVPLDIHSY--GYCCFLTVR-HGPF 81

Query: 291 DQIDTTH*CYPMVTYCDSQSIQ---CLISMFYPY--ISPNNLEILSI*WVIVQSCFGLRK 455
            ++   +  + +V  C   S      L+   Y Y  +  ++L   +  W +  S F L  
Sbjct: 82  SEVSEFN-FHMLVGRCSLVSASYAIILLHFVYRYLVVQKSSLTDRNFHWYMTISAFVLVL 140

Query: 456 YLCVVYA 476
           Y    +A
Sbjct: 141 YFVTWHA 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,116,433
Number of Sequences: 27780
Number of extensions: 377679
Number of successful extensions: 803
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)