Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0367
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    25   0.71 
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    25   0.71 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.2  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -3

Query: 620 HKVYRLQLQCKKIQNYMDKTLSKLGHWLS 534
           H     Q QCKK      + L KL  W +
Sbjct: 66  HITEAFQTQCKKCTEIQKQNLDKLAEWFT 94


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -3

Query: 620 HKVYRLQLQCKKIQNYMDKTLSKLGHWLS 534
           H     Q QCKK      + L KL  W +
Sbjct: 66  HITEAFQTQCKKCTEIQKQNLDKLAEWFT 94


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = -3

Query: 524 TRQFIKLFIFNYNSHPRINHT*IFPQAKTRLNYYPSYGQDF*IIGTDIRIEHRD*TLY*L 345
           T++   L++ + N    I H+     A    ++Y  +     ++      EHRD  +Y  
Sbjct: 14  TQRIQGLYLLDNNDSSGIPHS-AESSASNSPDHYERFSPSTHLMDLSSPPEHRDLPIYQS 72

Query: 344 GVTISHHRVASVCSVYLI 291
              + HH+V    S YL+
Sbjct: 73  HHHLHHHQVLYQQSPYLM 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,560
Number of Sequences: 438
Number of extensions: 4649
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)