Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0367
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containi...    30   1.3  
At3g04660.1 68416.m00499 F-box family protein contains F-box dom...    28   7.1  
At4g35180.1 68417.m05001 amino acid transporter family protein s...    27   9.4  
At1g37150.3 68414.m04643 holocarboxylase synthetase 2 (HCS2.d) i...    27   9.4  
At1g37150.2 68414.m04642 holocarboxylase synthetase 2 (HCS2.d) i...    27   9.4  

>At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 650

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
 Frame = -3

Query: 692 IKTAFIPNSTTGTLISNLMVGAG----LHKVYRL--QLQCKKIQNYMDKTLSKLGH 543
           ++T   PN  T +L+ NL+V  G    L  V  +  +   + I +Y+ +TLSKLGH
Sbjct: 332 VETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGH 387


>At3g04660.1 68416.m00499 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 390

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = -3

Query: 605 LQLQCKKIQNYMDKTLSKLG----HWLSLVCTRQFIKLFIFNYNSHPRI 471
           L+L+ + +     K+++KLG    HW S++  + F  L++    +HPR+
Sbjct: 26  LELKIEILMKSPPKSIAKLGFVSNHWSSIIRGQVFTDLYMRRSLAHPRL 74


>At4g35180.1 68417.m05001 amino acid transporter family protein
           similar to amino acid permease 1 GI:976402 from
           [Nicotiana sylvestris]; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 456

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 561 CFIHIILNFFAL*LEPIDLMKAC 629
           CFIH+   F  L   PI+LM AC
Sbjct: 320 CFIHLTFIFSCLCSYPINLMPAC 342


>At1g37150.3 68414.m04643 holocarboxylase synthetase 2 (HCS2.d)
           identical to holocarboxylase synthetase hcs2.d
           [Arabidopsis thaliana] GI:19698373; contains
           non-consensus GG acceptor splice sites; contains Pfam
           profile PF03099: Biotin/lipoate A/B protein ligase
           family; contains TIGRfam profile TIGR00121:
           biotin--acetyl-CoA-carboxylase ligase;
          Length = 297

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 213 SCSRFSVFLFWSPFICFTH-LRSHGPFDQIDTTH*C 317
           S  RF  FL WSP++  TH + SH  F +I     C
Sbjct: 68  STHRFGRFLIWSPYLSSTHDVVSHN-FSEIPVGSVC 102


>At1g37150.2 68414.m04642 holocarboxylase synthetase 2 (HCS2.d)
           identical to holocarboxylase synthetase hcs2.d
           [Arabidopsis thaliana] GI:19698373; contains
           non-consensus GG acceptor splice sites; contains Pfam
           profile PF03099: Biotin/lipoate A/B protein ligase
           family; contains TIGRfam profile TIGR00121:
           biotin--acetyl-CoA-carboxylase ligase;
          Length = 329

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 213 SCSRFSVFLFWSPFICFTH-LRSHGPFDQIDTTH*C 317
           S  RF  FL WSP++  TH + SH  F +I     C
Sbjct: 68  STHRFGRFLIWSPYLSSTHDVVSHN-FSEIPVGSVC 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,775,826
Number of Sequences: 28952
Number of extensions: 335997
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)