Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0366
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    57   2e-09
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    29   0.66 
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   3.5  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    26   4.7  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    26   4.7  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   6.1  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   6.1  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    26   6.1  

>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 27/74 (36%), Positives = 42/74 (56%)
 Frame = +3

Query: 261 LESLTYTPWYFVPMFWIPVILYLGWTQYYEQVACGEHCTDANITTFQYVYYISLGVLLWT 440
           LE LT TPWY +P+ W+P + Y G+       AC        I     + +  +G+  WT
Sbjct: 150 LEPLTKTPWYMIPLIWVPCVTY-GFL-----YAC------TGIPFSVAITFFIIGLFTWT 197

Query: 441 ILEYSLHRWIFHLD 482
           ++EY++HR++FHLD
Sbjct: 198 LVEYTMHRFLFHLD 211



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 509 LHFLIHGMHHKVPFDGLRQVFPPIPALGITTIIYSALRPFLPY 637
           +HF  HG HH +P D  R V PP   L   T  Y  ++  LP+
Sbjct: 223 MHFAFHGCHHFLPADKYRLVMPPALFLIFATPWYHFIQLVLPH 265



 Score = 30.3 bits (65), Expect = 0.29
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +1

Query: 661 LIGYLTYDMIHYYVHH 708
           ++GY+ YD+ HY++HH
Sbjct: 276 ILGYVFYDLTHYFLHH 291


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = +1

Query: 565 GVPPHTGSRYNHNNIL----STSAVSAL-PCASADRRLIGYLTY 681
           GVP H   RYNHN +L      +  S L PC   DR   G + +
Sbjct: 122 GVPVHPTGRYNHNTVLHILMKENKCSLLYPCNRLDRLTSGLMFF 165


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 276 MLDSRAMAREKSTFPVDRAVNPFLVVRRYG 187
           M+DS     E+ T P+D A  P   V+RYG
Sbjct: 112 MIDSHVHFGEQPTEPIDFADPPLPEVKRYG 141


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 392 NIPVRVLYFIGSAVVD-DTGILAASVDLSLGPGVVAHHDQLHFLIHGMHHKVPFDGLRQV 568
           N  + +L+ + S   D +  +L    D  + P     +  ++ L    H +V F+GL  V
Sbjct: 106 NDDIALLHKVPSLDTDPEDAVLKDGFDWYISPSDKIRYSDIYSLHCNKHGEVSFNGLAPV 165

Query: 569 FPP 577
           F P
Sbjct: 166 FTP 168


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 315 VILYLGWTQYYEQVACGEHCTDANITTFQYVYYISLGVLLWTILEYSLH-RWI-FH 476
           VI++  W      +      T  +ITT  + Y +S G L+W    YSL  R++ FH
Sbjct: 232 VIIFHTWYVLDSLINESAVLTTMDITTDGFGYMLSFGDLVWVPFLYSLQARYLAFH 287


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 201 LREMG*QRGLPEM*TFREPLLESLTYTPWYFVPMFWIPVIL 323
           L+EMG  +G+ E    ++  + +L      ++P +W+ V+L
Sbjct: 383 LQEMGFNKGVNEYHILQKNAIGNLIIAVAGYIPGYWVSVVL 423


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 480 PSERSTDAASIPVSSTTALPMKYNTRTG 397
           P +R+ +AA++  S      M YN RTG
Sbjct: 63  PHQRAHNAAALARSGGPGFSMNYNARTG 90


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 384 NITTFQYVYYISLGVLLWTILEYSLHRWIFHLDPGSSLIMI 506
           N+ +F   ++ SLG L + +L  S   WIF L  GS+ + +
Sbjct: 228 NLVSFPNYFFESLGWLFFALLTKSWASWIF-LFVGSAQMFV 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,262,193
Number of Sequences: 5004
Number of extensions: 73110
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)