Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0366
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0177 + 32163393-32163443,32163711-32163803,32163875-321640... 54 9e-08
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 34 0.097
09_06_0179 + 21380018-21380346,21380468-21380595,21380710-213808... 29 4.8
03_01_0314 - 2477593-2480685 29 4.8
03_01_0509 + 3836284-3836547,3836927-3837157,3837253-3837423,383... 28 6.4
07_03_1065 + 23711677-23711837,23711859-23712180,23713071-23713277 28 8.5
06_01_1094 - 8977548-8977600,8977673-8978078 28 8.5
05_07_0023 + 27110491-27110775 28 8.5
>03_06_0177 +
32163393-32163443,32163711-32163803,32163875-32164071,
32164157-32164262,32164391-32164537,32164637-32164756
Length = 237
Score = 54.4 bits (125), Expect = 9e-08
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +3
Query: 246 FREPLLESLTYTPWYFVPMFWIPVILYLGWTQYYEQVACGEHCTDANITTFQYVYYISL- 422
F +LE LT T W+ VP W+PV+ +L + + G T Q V ++L
Sbjct: 42 FGNDVLEFLTRTKWFAVPTIWLPVVCWL----LVKSIRMGH--------TIQEVGLMALF 89
Query: 423 GVLLWTILEYSLHRWIFHLD 482
G+ +WT++EY+LHR++FH++
Sbjct: 90 GIFIWTLIEYTLHRFLFHIE 109
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/45 (44%), Positives = 25/45 (55%)
Frame = +2
Query: 512 HFLIHGMHHKVPFDGLRQVFPPIPALGITTIIYSALRPFLPYPVL 646
H+L+HG HHK P D LR VFPP A I + + L F P +
Sbjct: 119 HYLLHGCHHKHPMDSLRLVFPP-TATAILCVPFWKLVAFFATPTI 162
Score = 34.3 bits (75), Expect = 0.097
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 661 LIGYLTYDMIHYYVHHG 711
L+GY+ YD HYY+HHG
Sbjct: 171 LLGYVMYDCTHYYLHHG 187
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 34.3 bits (75), Expect = 0.097
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 661 LIGYLTYDMIHYYVHHG 711
L+GY+ YD HYY+HHG
Sbjct: 70 LLGYVMYDCTHYYLHHG 86
>09_06_0179 +
21380018-21380346,21380468-21380595,21380710-21380853,
21380938-21381086,21381226-21381361,21381583-21381679,
21382056-21382156,21382354-21382466,21382865-21382936,
21382970-21383161,21383249-21383344,21383463-21383615
Length = 569
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 548 FDGLRQVFPPIPALGITTIIYSALRPFLPYPV-LVLTGDSLAT*LTT*YITMFI 706
F GL+ P+ G+ I L PFL Y + L L G +LAT + + Y+ MF+
Sbjct: 282 FRGLKDTKTPLLYSGLGNISAVLLLPFLVYSLNLGLNGAALAT-IASQYLGMFL 334
>03_01_0314 - 2477593-2480685
Length = 1030
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 256 GSRKVYISGRPRC*PISRSPALWRGAGTAKASTSLDGYSVIRVHG 122
G+ VY + PR + LWR AG + +T++DG + + G
Sbjct: 718 GTGVVYRADMPRHHAVVAVKKLWRAAGCPEEATTVDGRTDVEAGG 762
>03_01_0509 +
3836284-3836547,3836927-3837157,3837253-3837423,
3838379-3838522,3838640-3838819,3838926-3839151,
3839326-3839439,3839541-3839627,3839711-3839754
Length = 486
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 575 GGTPGANHQRELYGACRVLRNAVDHDERRP--RVQVKDPPMQRVFQYRPQQHS 423
G T GA + +G LR V E P +V + PP+ F++RP+ ++
Sbjct: 13 GATGGAGRR---WGPGEALRRLVSSSEAAPAEKVPARSPPVMPPFEHRPRPYA 62
>07_03_1065 + 23711677-23711837,23711859-23712180,23713071-23713277
Length = 229
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -2
Query: 684 VVS*VANESPVSTSTG*GRNGRSAEYIIVVIPRAGMGGN 568
V S V++ S V S G G GR +VV+P G GGN
Sbjct: 49 VASLVSSTSDVRHSVGGGDGGRGR---VVVVPGEGSGGN 84
>06_01_1094 - 8977548-8977600,8977673-8978078
Length = 152
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 662 SLRSALA--QGRAETAEVLSILLWLYLEPVWGGTPGANHQRELYGACRVLRNAVD 504
SL SAL +G A E++ LL WGG PGA +RE G R AV+
Sbjct: 14 SLWSALEDQRGGAHEEELVPFLLSSSSSASWGGLPGA-REREKEGLLRRAGAAVE 67
>05_07_0023 + 27110491-27110775
Length = 94
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 142 CSRLDWSKPLLCQLHAIAPDYEKWVNSAVYRKCRLFASH 258
CSR+ +P LCQ +A P+ +++VNS +K L A H
Sbjct: 52 CSRMKEQQPCLCQ-YARDPNLQRYVNSPNGKKV-LAACH 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,612,992
Number of Sequences: 37544
Number of extensions: 498788
Number of successful extensions: 1349
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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