Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0366
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   8.6  
SB_6127| Best HMM Match : Avidin (HMM E-Value=0)                       23   9.9  

>SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 448 SSIVHNSTPNEI*YTYWNVVMFAS 377
           S+ +HNS PN I  T+W +  F+S
Sbjct: 126 STTMHNSLPNTIRTTWWPITFFSS 149


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 556  FAPGVPPHTGSRYNHNNILSTSAVSALPCASADRRLIGY 672
            F P   P+   + N    L  SA    PC    RR IGY
Sbjct: 2289 FIPDCKPNGAYKRNSATPLRASAAGLSPCLKERRRAIGY 2327


>SB_6127| Best HMM Match : Avidin (HMM E-Value=0)
          Length = 389

 Score = 23.0 bits (47), Expect(2) = 9.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 564 WRKPSKGTLWCMPCIKKCS 508
           W+  S  T+W   CI KCS
Sbjct: 134 WKNGSSTTVWTAQCI-KCS 151



 Score = 23.0 bits (47), Expect(2) = 9.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 483 GPSERSTDAASIPVSSTTALPMKYNTRT 400
           GP ++  D  S+P  ST    +K+  R+
Sbjct: 192 GPRKQGIDPTSLPTISTDFKTLKFTPRS 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,141,956
Number of Sequences: 59808
Number of extensions: 574108
Number of successful extensions: 1549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)