Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0365
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   2.1  
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    27   3.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.4  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   8.4  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   8.4  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 140 APDRSYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPTKDVIEQEKSA 289
           A ++  R+ EG+ ++ +R   ++S  AEA+       APT DV E   +A
Sbjct: 105 AANQKTRNAEGERKVAQRR--VQSDKAEANDAAMSSSAPTVDVSEGNSAA 152


>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 667 KKI-NSFFLHINYINQN*KVKYFRKILIKYTFK 572
           KK+ NS FLH    +QN +V+  ++I++  ++K
Sbjct: 106 KKVDNSLFLHKKISSQNAQVRLIKRIVMSLSYK 138


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 107 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 202
           ++HD G   S + DR     + K++   +HRE
Sbjct: 720 QSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 134 ILFFRRRVLHLSLVEVFNSVQEVL 63
           I++ + + LHL LV +FN   E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 210 PTKLKHTETCEKNPLPQRTSLSKRNQLEPLLYNSYSQMYLASI 338
           PT+L  ++      LP+R    K++Q+ P+L ++ S + + +I
Sbjct: 140 PTELFQSQNDYSRFLPKRKDFEKKSQVGPVLSSNASTVRMNTI 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,800
Number of Sequences: 5004
Number of extensions: 54570
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)