Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0365
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0057 + 22410167-22411330 31 0.94
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 30 1.6
06_02_0203 + 12986685-12988691 30 1.6
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603... 30 2.2
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 29 5.0
01_06_0241 - 27813076-27813622,27813695-27814125 29 5.0
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 28 6.6
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 28 8.7
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 28 8.7
>04_04_0057 + 22410167-22411330
Length = 387
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +2
Query: 20 PASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERH 196
P RC S PP P + + D++ +D RKE RS ++P H
Sbjct: 198 PERSPRCQPSPPPPPPPHALVIPVEDEEDDSDEDDRKEEAVELEMLRSERRAARLPRSH 256
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Frame = +2
Query: 2 RDSGEEPASGQRCCRSGESPPEPLGR----S*TLRQDSDEAHDDGRKESTAPDRSYRSGE 169
R G G+R ESPP P + S +DS E D +E+ P R G
Sbjct: 66 RRHGHHRDGGRRSLSPSESPPPPAAKRERSSSRAPRDSVERRDSADREAPPPSSRKRKGH 125
Query: 170 ---GKEQIPERHRELRS 211
G E PE + R+
Sbjct: 126 EGGGNESDPEGGKRARA 142
>06_02_0203 + 12986685-12988691
Length = 668
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 21 PLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 122
P+P+ + +AA++AH N G EH K + TTT
Sbjct: 505 PVPNSNAIAADEAHGNATAG-EHDKKETAEQTTT 537
>01_07_0081 -
40959279-40959375,40959463-40959589,40960138-40960339,
40962414-40963361
Length = 457
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 297 VVQADFSCSMTSFVGAGSSRTFPCASA-*W-DRSSRCRSGICSFPSPLR*LR 148
VV+ F C++ + VG G + +P W D SRC G SF SP+R +R
Sbjct: 152 VVEMLFRCNILALVGGGDAPHYPPNKVMIWDDHQSRC-IGELSFRSPVRGVR 202
>06_03_0723 + 23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 110 AHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPTK 262
+HDD R+ T PD S R+G E P + +R H E P P K
Sbjct: 1349 SHDDCREPLT-PDSSCRAGSPLESPPRASKRIRVSSDIDHRGNNEFPPPLK 1398
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 92 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH 214
R + + H+ ++S +RS+R+ ++ + HR RSH
Sbjct: 21 RVEPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSH 61
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 59 PPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 193
PP P GR RQ + DG+ + D S RS +G P++
Sbjct: 89 PPPPRGRRRVTRQFWNAGDYDGKPDLLGGDPSLRSDDGGGMDPDK 133
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +2
Query: 104 DEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPTKDVIEQEK 283
D+ DD ST Y SG ++ + RELR A+ G + E+P T D EQ K
Sbjct: 4429 DKDEDDDPNRST---EKYESGSSAKETQKNDRELR---AKDEGALEEDPMET-DCDEQGK 4481
Query: 284 S 286
+
Sbjct: 4482 N 4482
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Frame = +2
Query: 5 DSGEEPASGQ--RCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKE 178
+SG+EP + SG + P P + D + DD ES+ D + + K+
Sbjct: 332 ESGDEPPQKKIKDSTTSGTTKPSPKATKKEISSDDESDEDDSSDESSDEDVKQKQTQAKK 391
Query: 179 -QIPERHRELRSH*AEAHGNVREEPAPTK 262
Q P S + + E P K
Sbjct: 392 VQAPVAQESSSSDESSEEDSDMESDEPAK 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,273,204
Number of Sequences: 37544
Number of extensions: 337442
Number of successful extensions: 844
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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