Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0365
(729 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 64 1e-10
SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0) 32 0.55
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 31 1.3
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 30 1.7
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6) 29 2.9
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087) 29 2.9
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 29 3.9
SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1) 29 5.1
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 29 5.1
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 29 5.1
SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3) 28 8.9
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 64.1 bits (149), Expect = 1e-10
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Frame = +3
Query: 6 TQEKNPLPDKDVVAAEKAHQNLLDGVE--HFDKTQMKHTTTEEKNPLXXXXXXXXXXXXN 179
TQEKNPLP + E +N D E FD T++KH TT+EK+ + +
Sbjct: 580 TQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMPSQEDIKEEAVDS 639
Query: 180 KFLNGIENFDPTKLKHTETCEKNPLPQRTSLSKRNQLEPL 299
+ +++FD +KLKH ET EKNPLP L + + E L
Sbjct: 640 RA--EVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVL 677
Score = 62.1 bits (144), Expect = 4e-10
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Frame = +3
Query: 3 ETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXX 176
ET EKNPLP V+ E + L D V FD +++KH +EKNPL
Sbjct: 655 ETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTE 714
Query: 177 NKFLNGIENFDPTKLKHTETCEKNPLPQRTSLSK 278
+ ++ FD +KLKH +T EKNPLP ++++
Sbjct: 715 TRA--EVKTFDHSKLKHVQTEEKNPLPDAKTIAQ 746
Score = 60.9 bits (141), Expect = 1e-09
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +3
Query: 3 ETQEKNPLPDKDVVAAEKAHQNLLDGVE--HFDKTQMKHTTTEEKNPLXXXXXXXXXXXX 176
+T+EKN LP + + E D E F+K++++H T+EKN L
Sbjct: 426 QTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEKRT 485
Query: 177 NKFLNGIENFDPTKLKHTETCEKNPLPQRTSL 272
F +G+E F KLKH ET EKNPLP ++
Sbjct: 486 APF-SGVEVFQKNKLKHVETLEKNPLPDAQNI 516
Score = 56.8 bits (131), Expect = 2e-08
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Frame = +3
Query: 3 ETQEKNPLPDKDVVAAEKAHQNLLDGVE--HFDKTQMKHTTTEEKNPLXXXXXXXXXXXX 176
ET EKNPLPD + AE + L D E FD +++KH T+EK +
Sbjct: 503 ETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAID 562
Query: 177 NKFLNGIENFDPTKLKHTETCEKNPLPQRTSL 272
++ +++FD +KLKH T EKNPLP +L
Sbjct: 563 SRA--EVKSFDHSKLKHVVTQEKNPLPTPQTL 592
Score = 55.2 bits (127), Expect = 5e-08
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +3
Query: 6 TQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKF 185
TQEK+ +P ++ + E V+ FD +++KH T EKNPL
Sbjct: 620 TQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVL 677
Query: 186 --LNGIENFDPTKLKHTETCEKNPLPQRTSLS 275
++ + +FD +KLKH E EKNPLP + ++
Sbjct: 678 PDVSAVASFDASKLKHVEVQEKNPLPTKDDIT 709
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +3
Query: 27 PDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKFLNGIE-- 200
P +V + + + V FD +KH T+EKN L ++F + E
Sbjct: 396 PGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVK 455
Query: 201 NFDPTKLKHTETCEKNPLPQRTSLSKRNQLEP 296
+F+ +KL+H ET EKN LP + +++ + P
Sbjct: 456 SFEKSKLQHVETKEKNTLPTKDTIADEKRTAP 487
Score = 31.1 bits (67), Expect = 0.96
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 3 ETQEKNPLPDKDVVAAEKA 59
+T+EKNPLPD +A EKA
Sbjct: 731 QTEEKNPLPDAKTIAQEKA 749
>SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)
Length = 470
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 104 DEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPTKDVIEQE 280
D + D E T P R +G+ + RHR+ + A+ EE P+ DVI Q+
Sbjct: 370 DRSQSDSEPEDTTPLRQKGAGKDNSR-KRRHRKKTGNEAQHSAGSDEEDEPSYDVISQD 427
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/94 (15%), Positives = 44/94 (46%)
Frame = +2
Query: 2 RDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 181
++ G+ + ++ R E P + L + ++ D+ + +E PD+ + +++
Sbjct: 829 QEQGKPDKNKEKQDREQEKPDKDLEKQYQKQEKPDKGQEKQDREQEKPDKDQEKQDREQE 888
Query: 182 IPERHRELRSH*AEAHGNVREEPAPTKDVIEQEK 283
P++ +E + H E +E+ ++ ++E+
Sbjct: 889 KPDKDQEKQDHEQEKPDKDQEKQDREQEKTDKER 922
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +2
Query: 92 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPTKDVI 271
+ D D+ D +E PD+ + +++ P++ +E + E RE+P +D
Sbjct: 875 KPDKDQEKQD--REQEKPDKDQEKQDHEQEKPDKDQEKQDREQEKTDKEREQPYQEQDKP 932
Query: 272 EQEKS 286
+QE +
Sbjct: 933 DQENT 937
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 3 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 113
+T E++P DK A +LLDG+ FD+ + +H
Sbjct: 261 KTIEQDPTSDKSYKALRDTTHDLLDGLRDFDQAKEEH 297
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 3 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 113
+T E++P +K A +LLDG++HF + + +H
Sbjct: 163 KTIEQDPSSEKSYQALRDTTHDLLDGLQHFGQAKEEH 199
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 131 ESTAPDRSYRSGEGKEQIPERHR 199
+STA D SY SG G E P HR
Sbjct: 483 DSTASDSSYDSGSGPELSPNEHR 505
>SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6)
Length = 692
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 3 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 113
+T E++P +K A +LLDG+ +FD+ + +H
Sbjct: 537 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQAKEEH 573
>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 3 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 113
+T E++P +K A +LLDG+ +FD+ +H
Sbjct: 567 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 603
>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
Length = 556
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 3 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 113
+T E++P +K A +LLDG+ +FD+ +H
Sbjct: 492 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 528
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 353 LM*VRSICVVHYKFYFCFCTMATLPG 430
L+ V IC VH FY+C C +++ G
Sbjct: 55 LVAVLRICSVHLDFYYCTCVWSSMAG 80
>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
Length = 966
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 128 KESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPT-KDVIEQEKSA 289
+E + + S +G KE+ E RE R H + V+EEP + ++ I+ E++A
Sbjct: 840 EEPSDEEESEEAGREKEEEEEDQREGRDHNDDEESVVKEEPENSQEEEIDDEEAA 894
>SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)
Length = 766
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Frame = +3
Query: 12 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT-----------TTEEKNPLXXXXXX 158
E++P +K A +LLDG+ +FD+ + +H E++P
Sbjct: 173 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEHAKLIPKYHEIMIKNIEQDPKSEKSYQ 232
Query: 159 XXXXXXNKFLNGIENFDPTKLKHTETCEK 245
+ L+G+ FD K +H + K
Sbjct: 233 ALRDTTHDLLDGLRYFDQAKEEHAKLIPK 261
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 12 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 113
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 75 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 108
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 12 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 113
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 320 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 353
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -2
Query: 185 EFVLFLLRFDSFDRGQWILFFRRRVLHLSLVEVFNSVQEVL 63
+FVL++LRF +D I ++ + HL+LVE + +Q+ L
Sbjct: 295 DFVLYMLRFSDYD----IYTGKKSIAHLTLVEFESWLQDEL 331
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 310 VTRKCISLVSPYFNIDVSQIDL 375
+ KC L+SPY ++D+ DL
Sbjct: 13 IAAKCTQLISPYLDLDIKYFDL 34
>SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3)
Length = 334
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +2
Query: 11 GEEPASGQRC----CRSGESPPEPLGRS*T-LRQDSDEAHDDGRK---ESTAPDRSYRSG 166
GEEP+S S + P P+ + + +D D+ +G + ES A DRS+ SG
Sbjct: 181 GEEPSSRTETPDLYILSNDIPTSPVDEAPLPVDEDDDDEQVNGLRMLPESVALDRSHESG 240
Query: 167 EGKEQIP 187
G +P
Sbjct: 241 RGTPHLP 247
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,304,284
Number of Sequences: 59808
Number of extensions: 409130
Number of successful extensions: 1129
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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