Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0365
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    69   5e-12
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    32   0.37 
L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans chrom...    31   0.64 
Z93383-3|CAB07625.1|  309|Caenorhabditis elegans Hypothetical pr...    31   1.1  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 37/97 (38%), Positives = 49/97 (50%)
 Frame = +3

Query: 3   ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNK 182
           ET EKN LP K+ VA EK H   +  +EHFD T++  T  +EK  L             +
Sbjct: 28  ETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLE 87

Query: 183 FLNGIENFDPTKLKHTETCEKNPLPQRTSLSKRNQLE 293
             + I NF    LK TET EKN LP  T +++   L+
Sbjct: 88  LTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQ 124


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +2

Query: 110 AHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AE--AHGNVREEPAPTKDVIEQEK 283
           + D  R    +P+RS RS E + + PER    RS   E   + + R   + +++VI++EK
Sbjct: 270 SRDTHRTRRRSPERSRRSTETRNERPERPSRWRSRSRERKEYDSYRRRRSRSREVIDKEK 329


>L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans
           chromodomain proteinprotein 1 protein.
          Length = 304

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +2

Query: 98  DSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AE---AHGNVREEPAPTKDV 268
           D+DE H    K+S A D      + +E +P++ +E++    E     G   EE    +D+
Sbjct: 127 DTDEEHSSADKKSKAEDEE-EVEDDEEPVPKKKKEVQEEPEEEESVEGEDEEESQEVEDL 185

Query: 269 IEQEK 283
            E EK
Sbjct: 186 KEDEK 190


>Z93383-3|CAB07625.1|  309|Caenorhabditis elegans Hypothetical
           protein F54B8.3 protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
 Frame = -2

Query: 233 FRVLQLSGIEVLDAVQEFVLFLLRFDSFDRGQWILFFRR-----RVLHLSLVEVFNSVQE 69
           F V+ L+ ++V  A++    F    ++ DR Q I +F+R       LH+  VE++NS  +
Sbjct: 99  FLVIALNDLKV--ALKHVSCFAYVDNTLDRYQNITYFKRFLKSEETLHVEEVEIWNSYVD 156

Query: 68  VLVGFLRCDNIFVRKRV 18
            ++  LRC +  V K +
Sbjct: 157 DVMTILRCCDSEVLKDI 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,289,210
Number of Sequences: 27780
Number of extensions: 311663
Number of successful extensions: 840
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)