Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0365
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   0.32 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.55 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.9  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.0  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   9.0  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   9.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +2

Query: 107 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPTKDVIE 274
           E HDD  + S  P   + + E    I    R+ RS    AH      P   + V+E
Sbjct: 59  EGHDDREQPSVYPLLRFENPETHHPIRHGRRQSRSMDLNAHREQMSWPVKKEAVVE 114


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 56   SPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKE 178
            SPP PL  S    +D D   D  + + ++ +R   +G  +E
Sbjct: 1396 SPPTPLSISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQE 1436


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 401 CFCTMATLPGQWRRTATPDFIQIL 472
           C C+M  LPG   +T+T ++ +I+
Sbjct: 684 CNCSMDWLPGINNQTSTREYPRIM 707


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 552 PNFLCHFLNVYFISILRKY 608
           P F+CH   + F  +  KY
Sbjct: 50  PTFMCHKYGLRFEEVSEKY 68


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
          protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 41 CRSGESPPEPLGR 79
          C  GE+P +P+GR
Sbjct: 54 CALGEAPCDPVGR 66


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
          protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 41 CRSGESPPEPLGR 79
          C  GE+P +P+GR
Sbjct: 54 CALGEAPCDPVGR 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,979
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)