Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0365
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f...    27   9.6  
At3g53640.1 68416.m05925 protein kinase family protein contains ...    27   9.6  

>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
           family protein similar to pVHL-interacting
           deubiquitinating enzyme 1 type II [Homo sapiens]
           GI:18698435; contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 974

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
 Frame = +2

Query: 14  EEPASGQRCCRSGESPPEPLGRS*TLR------QDSDEAHDDGRKESTAPDRSYRSGEG 172
           E     +R     +SPP PLG +  L        D DE  ++ +K+S A       GEG
Sbjct: 446 EREVKRKRVMERSDSPPPPLGFNNPLLPLANTYDDDDEEEENEQKKSQARGNGVAKGEG 504


>At3g53640.1 68416.m05925 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 642

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
 Frame = +2

Query: 2   RDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS-----G 166
           R+S  +   G+       S     GR     +  D+  D GR+E  +    Y+S     G
Sbjct: 82  RESNRDNYRGRSSRDKARSSSRETGRENERERRKDQDRDRGRREDQSDQEIYKSGGDGYG 141

Query: 167 EGKEQIPERHRELRSH--*AEAHGNVREEPAPTKD 265
           E +    +    L+SH    E  GNV        D
Sbjct: 142 EVRHDAEDDLDSLKSHKPNGETQGNVERSEVDNDD 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,156,609
Number of Sequences: 28952
Number of extensions: 277809
Number of successful extensions: 770
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)