Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0363
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 84 1e-21
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 55 8e-09
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 36 0.007
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 33 0.038
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 32 0.088
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 31 0.20
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 30 0.27
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 27 2.5
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 5.8
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 25 7.6
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 7.6
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 84.2 bits (199), Expect = 2e-17
Identities = 42/83 (50%), Positives = 56/83 (67%)
Frame = +2
Query: 2 FRVRMNRAENQAGNTAIDSLINYETVKYFNNERHELEKYDAXLRQYESASLKTAWSLAAL 181
FR + N A+++A AI+SLINYE VK FNNE +E+ +Y+ L YE A++K A SLA L
Sbjct: 291 FRRQANAADSKASAAAIESLINYEAVKTFNNESYEMSRYEKHLSAYEKANVKVASSLAFL 350
Query: 182 NFGQHAIFSAGLSLVMLLAAREI 250
N GQ IFS L+L+M + R I
Sbjct: 351 NSGQAIIFSTALTLMMYMGCRGI 373
Score = 78.6 bits (185), Expect(2) = 1e-21
Identities = 37/76 (48%), Positives = 56/76 (73%)
Frame = +1
Query: 259 SMTVGDLVXVNGLLFQLSIPLGFLGSVYREVRQALVDMQTMFTLMTVQSRIKEIQKAPPM 438
++TVGDLV +N L+FQLSIPL FLGSVYRE+RQA DM+ +F+L + ++KE A +
Sbjct: 377 NLTVGDLVMINQLVFQLSIPLNFLGSVYREMRQAFTDMEQLFSLKRINIQVKEAPDARDL 436
Query: 439 IVDSRTATIEFRDVNF 486
++ + +I+F +V+F
Sbjct: 437 VL--KGGSIQFDNVHF 450
Score = 39.9 bits (89), Expect(2) = 1e-21
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +1
Query: 490 KSTMVRRCTDSFEPQSGNIFINGQNIRDVDLVSLRKAIAVVPQ 618
KST++R ++ SG I I+ Q + + L SLRKAI VVPQ
Sbjct: 482 KSTILRLLFRFYDTDSGKILIDNQRLDQITLNSLRKAIGVVPQ 524
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 55.2 bits (127), Expect = 8e-09
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Frame = +1
Query: 256 GSMTVGDLVXVNGLLFQLSIPLGFLGSVYREVRQALVDMQTMFTLMTVQSRIKEIQKAPP 435
G TVGD V + + QL PL F G++YR ++ +++D + + + + + E AP
Sbjct: 517 GFNTVGDFVILLTYMIQLQQPLNFFGTLYRSLQNSIIDTERLLEIFEEKPTVVEKPNAPD 576
Query: 436 MIVDSRTATIE------------FRDVNF----------------KKSTMVRRCTDSFEP 531
+ V D+NF KST++R F+
Sbjct: 577 LKVTQGKVIFSHVSFAYDPRKPVLSDINFVAQPGKVIALVGESGGGKSTIMRILLRFFDV 636
Query: 532 QSGNIFINGQNIRDVDLVSLRKAIAVVPQ 618
SG+I I+ Q+IR+V L SLR +I VVPQ
Sbjct: 637 NSGSITIDDQDIRNVTLSSLRSSIGVVPQ 665
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/66 (34%), Positives = 37/66 (56%)
Frame = +2
Query: 53 DSLINYETVKYFNNERHELEKYDAXLRQYESASLKTAWSLAALNFGQHAIFSAGLSLVML 232
D+++N+ETVK F+ + E E+Y + Y K +SL LN Q IF+ L++ L
Sbjct: 449 DAIMNFETVKNFDADDFENERYGHAVDIYLKQERKVLFSLNFLNIVQGGIFTFSLAIACL 508
Query: 233 LAAREI 250
L+A +
Sbjct: 509 LSAYRV 514
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 35.5 bits (78), Expect = 0.007
Identities = 14/43 (32%), Positives = 29/43 (67%)
Frame = +1
Query: 490 KSTMVRRCTDSFEPQSGNIFINGQNIRDVDLVSLRKAIAVVPQ 618
KST++ ++P G +F++G+++R +++ SLR I++V Q
Sbjct: 461 KSTIIGLVERFYDPIGGQVFLDGKDLRTLNVASLRNQISLVQQ 503
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 490 KSTMVRRCTDSFEPQSGNIFINGQNIRDVDLVSLRKAIAVVPQ 618
KST + ++ +G + ++G N+RD ++ RK IA+V Q
Sbjct: 1160 KSTTIGLIERFYDCDNGAVLVDGVNVRDYNINDYRKQIALVSQ 1202
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 33.1 bits (72), Expect = 0.038
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 490 KSTMVRRCTDSFEPQSGNIFINGQNIRDVDLVSLRKAIAVVPQ 618
KST+ EP SG+I ++ NI + L LR +A++PQ
Sbjct: 1264 KSTLTLALFRLIEPTSGDIQLDDINITSIGLHDLRSRLAIIPQ 1306
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 31.9 bits (69), Expect = 0.088
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 535 SGNIFINGQNIRDVDLVSLRKAIAVVPQ 618
SG I+ING+ + V+L +LR+ I+ +PQ
Sbjct: 1267 SGEIYINGRETQSVNLNALRQRISFIPQ 1294
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 618 LRNDCDGLPQANQVHVPDVLSVDEY 544
+RND L + N VHVP++ SV+E+
Sbjct: 564 IRNDLHQLAKKNSVHVPELYSVEEH 588
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 490 KSTMVRRCTDSFEPQSGNIFINGQNIRDVDLVSLRKAIAVVPQ 618
KST+ EP G I I+ ++I L LR ++++PQ
Sbjct: 1266 KSTLAMALFRIIEPTEGKIEIDNEDITKFGLYDLRSRLSIIPQ 1308
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +2
Query: 68 YETVKYFNNERHELEKYDAXLRQYESASLKTAWSLAALNFGQHAIFS 208
++ +K +L+KYD L+ Y+ T W N+ + +I++
Sbjct: 69 FKALKQITKINFQLKKYDDMLQSYQRLLGYTNWLSITKNYSEKSIYN 115
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 459 HDRVQRRELQKIHNGPTLYRFFRTAVREHIHQRTEHP 569
H R+ + ++ GPT Y+ + V + IH R P
Sbjct: 1063 HGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGP 1099
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 370 MQTMFTLMTVQSRIKEIQKAPPMIVDSR 453
++T+ T +T Q+ +KE+Q +++DSR
Sbjct: 714 VETLRTYITKQAALKELQHEALVMIDSR 741
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 383 NMVCMSTSAWRTSRYTEPRKPSGMDSWNRRPF 288
N + +TS +S T+PR PS +DS+ F
Sbjct: 171 NSIKEATSPKTSSILTKPRNPSKLDSYTHLSF 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,415
Number of Sequences: 5004
Number of extensions: 39685
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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