Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0356
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...   102   5e-23
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    58   1e-09
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    44   1e-05
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    35   0.011
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    32   0.080
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    29   0.43 
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    29   0.75 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    28   0.99 
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    28   1.3  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   3.0  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    26   4.0  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   7.0  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   7.0  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   7.0  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score =  102 bits (244), Expect = 5e-23
 Identities = 50/82 (60%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
 Frame = +1

Query: 256 AAVSKTAVAPNERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVN 432
           AAVSKTA AP ERVKLL+Q Q  + +      RYKGI + F R   E+G++S WRGN  N
Sbjct: 38  AAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTAN 97

Query: 433 VIRYFPTQALNFAFKDKYKQVF 498
           V+RYFPTQALNFAFKDK+K++F
Sbjct: 98  VLRYFPTQALNFAFKDKFKKMF 119



 Score = 33.5 bits (73), Expect = 0.026
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 512 QEDAFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAAD 631
           + D + ++F             SL FVY LD+ARTRLA D
Sbjct: 124 ERDGYAKWFAGNLASGGAAGAASLLFVYSLDYARTRLAND 163



 Score = 32.7 bits (71), Expect = 0.046
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 325 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQVFLG 504
           S +   ++++ G+VD + +  +  GL   +RG   +V+     + L F   D  K V L 
Sbjct: 166 SAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLV 225

Query: 505 GVTRRRILA--LLRW 543
           G      LA  LL W
Sbjct: 226 GPLEGNFLASFLLGW 240


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 31/79 (39%), Positives = 47/79 (59%)
 Frame = +1

Query: 256 AAVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNV 435
           A VS+TAV+P ER+K++ QVQ+       ++ Y  +    V+I   +GL+ F+RGN  N 
Sbjct: 31  ATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNC 83

Query: 436 IRYFPTQALNFAFKDKYKQ 492
           +R FP  A+ FA  +  KQ
Sbjct: 84  LRAFPYGAVQFATFNMLKQ 102



 Score = 30.7 bits (66), Expect = 0.19
 Identities = 16/73 (21%), Positives = 32/73 (43%)
 Frame = +1

Query: 250 YLAAVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFV 429
           +   + +T   P + ++   QV  +         YK I  A   I K +G+  F+RG   
Sbjct: 235 FTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYSS 291

Query: 430 NVIRYFPTQALNF 468
           N+++  P  ++ +
Sbjct: 292 NMLKIIPVMSITW 304


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 25/80 (31%), Positives = 42/80 (52%)
 Frame = +1

Query: 262 VSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIR 441
           V+K+ VAP +RVK+L Q  H S +  A  R+ G+  A   I    GL   ++G+   + R
Sbjct: 30  VAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYR 88

Query: 442 YFPTQALNFAFKDKYKQVFL 501
            FP   + F   ++ ++V +
Sbjct: 89  VFPYAGIKFVAYEQVRRVLI 108


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +1

Query: 271 TAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFP 450
           T V P   ++  LQ Q  S   A    Y G +D F +  K +G    ++G   N+++  P
Sbjct: 351 TIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAP 407

Query: 451 TQALNFAFKDKYKQ 492
           + A+++   +  K+
Sbjct: 408 SVAISYLVYENCKK 421



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +1

Query: 259 AVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFVNV 435
           +V++  + P + +K  +Q   +S+     Q  K I+ +  + + K  G+  ++RG  V +
Sbjct: 240 SVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLVGI 295

Query: 436 IRYFPTQALNFAFKDKYKQVFLGGVTRR 519
           +  FP  A +    +  K+ ++G +  R
Sbjct: 296 LGMFPYSATDLGTFEGLKRTWIGILASR 323


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 31.9 bits (69), Expect = 0.080
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 352 YKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQVF 498
           Y G  D   +I K +G    +RG    ++   P +AL FA  D Y +++
Sbjct: 45  YNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW 93



 Score = 28.7 bits (61), Expect = 0.75
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 277 VAPNERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 420
           V P E +K+ LQ V++ SK       Y G VD F +I K++ +L+ + G
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNG 163


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +1

Query: 328 KQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQV 495
           + ++A + YK  +    +I  + GLL FW G    + R   +  + F   +K  ++
Sbjct: 232 QSLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGIVFTVYEKVMEI 287


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +1

Query: 283 PNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQAL 462
           P+E V+  L+    S  I    +Y G++  F  +  EQG++  + G   +++R  P   +
Sbjct: 292 PHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACI 348

Query: 463 NF 468
            F
Sbjct: 349 LF 350


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 337 AADQRYKGIVDAFVRIPKEQGLLSFWRGNF 426
           A    Y    DAF +I K +GL +F+RG F
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLF 254



 Score = 25.0 bits (52), Expect = 9.2
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = +1

Query: 265 SKTAVAPNERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFVNV 435
           S   VAP + VK   Q Q         +      G + +   I   +G+   +RG    +
Sbjct: 19  SSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMM 78

Query: 436 IRYFPTQALNFAFKDKYKQVFLGGVTRR 519
           + Y P+ ++ F   +K K +F  GV ++
Sbjct: 79  LGYLPSWSIYFVVYEKCKVLF--GVNKK 104


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
 Frame = +1

Query: 283 PNERVKLLLQVQHVSK-QIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFP--- 450
           PN  +   +QV    K + A     K + D  +      G + FW G F  + + F    
Sbjct: 187 PNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSADSSGAVKFWNGKFFTLSQSFKLHL 246

Query: 451 TQALNFAFKDKYKQVFLGGVTRRRI 525
             AL          VF  G+ R+ I
Sbjct: 247 ADALCLGVSANGDMVFSSGIDRKTI 271


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 377 TKASTIPL*RWSAAICLLTCCTWSSSLTRSLGATAV 270
           T+ + + +  WSA I +LT C    SLT SL  T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 361 IVDAFVRIPKEQGLLSFWRGNFVNVIRYFPT 453
           +++    + + +GL  F+RG ++ V  Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 244 WRYLAAVSKTAVAPNERVKL-LLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 411
           +RYL   S + +  N RV L L ++ H SK   +D    G+V     IP+E G + +
Sbjct: 350 FRYLILFS-SIIPINLRVNLDLAKIVH-SKNTESDPNLPGVVVRSSNIPEELGRIEY 404


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 373 FVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQV 495
           F    +++G+ + WRGN V  + Y    A  F    K K +
Sbjct: 55  FKETVQKEGVRALWRGNVVAELLYLVYGAAEFVAFSKLKHL 95



 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 352 YKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFP 450
           YK   D F+ I +  G+   +RG  V++++  P
Sbjct: 227 YKSFKDCFLSIYRNSGIKGLYRGLSVSMLKVAP 259


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 73  YEITPNLLFKNQELVFRDPPYACAATPTSTY 165
           YE+  N  F N       PP AC+   TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,068
Number of Sequences: 5004
Number of extensions: 48555
Number of successful extensions: 159
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)