Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0356
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 8e-21
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 3e-13
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 50 1e-06
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 46 2e-05
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 41 7e-04
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 40 0.002
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 39 0.003
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 39 0.004
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 37 0.016
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 36 0.021
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 36 0.021
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.064
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.20
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.45
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 31 0.79
SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 30 1.8
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 29 2.4
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35) 29 2.4
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012) 29 3.2
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.2
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.2
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 29 4.2
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 29 4.2
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 29 4.2
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 29 4.2
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 28 5.6
SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039) 28 5.6
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0) 28 7.4
SB_6061| Best HMM Match : NACHT (HMM E-Value=0.00065) 28 7.4
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 27 9.7
SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28) 27 9.7
SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40) 27 9.7
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 97.5 bits (232), Expect = 8e-21
Identities = 48/82 (58%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 AAVSKTAVAPNERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVN 432
A +SKTA AP ERVKLL+Q Q + K D YKG++D R + +G LSFWRGN N
Sbjct: 20 AIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEGFLSFWRGNLAN 79
Query: 433 VIRYFPTQALNFAFKDKYKQVF 498
IRYFPTQALNFAFKD+ K +F
Sbjct: 80 CIRYFPTQALNFAFKDQVKALF 101
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2
Query: 578 SLCFVYPLDFARTRLAAD 631
SL FVY LD+ RTRLA D
Sbjct: 127 SLFFVYSLDYCRTRLAND 144
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 72.1 bits (169), Expect = 3e-13
Identities = 34/78 (43%), Positives = 55/78 (70%)
Frame = +1
Query: 259 AVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVI 438
AVS+T+V+P ERVK+LLQ+Q + ++KG++ ++I KE+G+L +++GN NVI
Sbjct: 46 AVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNVI 99
Query: 439 RYFPTQALNFAFKDKYKQ 492
R FP A+ FA ++YK+
Sbjct: 100 RIFPYSAVQFAAYEEYKK 117
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/81 (41%), Positives = 47/81 (58%)
Frame = +1
Query: 253 LAAVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVN 432
LA VS+TA AP +R+K+LLQVQ A+ GIV F + +E G+ S WRGN N
Sbjct: 146 LAGVSRTATAPLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWRGNGAN 199
Query: 433 VIRYFPTQALNFAFKDKYKQV 495
VI+ P + F +K K++
Sbjct: 200 VIKIAPESGIKFFAYEKAKKL 220
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/79 (25%), Positives = 42/79 (53%)
Frame = +1
Query: 265 SKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRY 444
S+T++ P E +K L ++ + Y+G++ A I +++G+ SF+RG F +++
Sbjct: 244 SQTSIYPLEVLKTRLAIRKTGQ-------YRGLLHAASVIYQKEGIRSFYRGLFPSLLGI 296
Query: 445 FPTQALNFAFKDKYKQVFL 501
P ++ A + K +L
Sbjct: 297 IPYAGIDLAVYETLKNFYL 315
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 AAVSKTAVAPNERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 417
A +SKTA AP ERVKLL+Q Q + K YKG+VD +R + +G+ SFWR
Sbjct: 21 AIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDCTMRTYRAEGIGSFWR 75
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +1
Query: 307 LQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFA 471
L+V V Q+ + G++ F + K +G+ +FW+GN V+ IR FP A+ +A
Sbjct: 79 LEVVKVLAQVGTQEAKPGLIRTFASVYKREGIKAFWKGNGVSCIRLFPYSAVQYA 133
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 262 VSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIR 441
++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G + +
Sbjct: 165 IAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKGVTPSFLG 221
Query: 442 YFP 450
FP
Sbjct: 222 LFP 224
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/64 (34%), Positives = 38/64 (59%)
Frame = +1
Query: 277 VAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQ 456
+AP + VK+ LQ+Q +K+ + Y+G VD V++ + +GL ++GN V +R P
Sbjct: 51 IAPVDLVKIKLQMQTEAKR-STRSVYRGPVDCLVKLYRSRGLAGCFQGNTVTAVRDIPGF 109
Query: 457 ALNF 468
A+ F
Sbjct: 110 AVYF 113
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +1
Query: 349 RYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNF 468
RYKG++D ++ KE+G++ F RG + ++R F Q L F
Sbjct: 170 RYKGMMDCALQSYKEEGMIVFTRGIWPTLLRGF-LQVLRF 208
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/48 (29%), Positives = 30/48 (62%)
Frame = +1
Query: 349 RYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQ 492
+Y G+ +I +++GL +++GN N++R P A+ FA +++K+
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKK 637
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/80 (26%), Positives = 39/80 (48%)
Frame = +1
Query: 259 AVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVI 438
A TAV P + VK +Q Q + A++ YK +D F ++ + +G + +RG ++
Sbjct: 925 ATGATAVYPIDLVKTRMQNQRAV--LEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLL 982
Query: 439 RYFPTQALNFAFKDKYKQVF 498
P +A+ D + +F
Sbjct: 983 GVSPEKAIKLTTNDFVRGIF 1002
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +1
Query: 334 IAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQVF 498
I ++Y G+++AF RI +++G+ +F+RG +I P ++F + K+ F
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYETCKKAF 73
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 36.7 bits (81), Expect = 0.016
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +1
Query: 262 VSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 420
++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G
Sbjct: 434 IAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 483
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 352 YKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQVFL 501
Y + +A R+ KE+G+L+ WRG +R A A + KQ+ L
Sbjct: 35 YTNVFNALYRMSKEEGVLTLWRGYIPTAVRAMVVNAAQLATYSQAKQLLL 84
Score = 34.7 bits (76), Expect = 0.064
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 352 YKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQV---FLGGVT 513
YKG +D RI + +G+ + W+G R P L F F ++ + F GG +
Sbjct: 133 YKGTMDVLARIVRNEGVFALWKGFTPYYFRIGPHTVLTFIFLEQLNRAANYFYGGTS 189
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 36.3 bits (80), Expect = 0.021
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 280 APNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 420
AP ERVK LLQVQ K+ RY+G+ D +++ + GL ++G
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGLRGVFKG 222
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 35.1 bits (77), Expect = 0.049
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 364 VDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYK 489
+DA ++IP+ +GL S WRG ++ P + F D+ K
Sbjct: 64 IDALIKIPRYEGLSSLWRGLPPTMVMAVPNTVIYFTLYDQLK 105
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 361 IVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQV 495
++ AF I + +GLL++++GN ++R FP A+ F + Y +V
Sbjct: 13 VLTAFRAIYRNEGLLAYFKGNGAMMLRTFPYGAVQFLSYEHYSKV 57
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 262 VSKTAVAPNERVKLLLQVQ---HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 420
+SK + P + +K +QVQ + Q+Y G+ D F I KE+G + ++G
Sbjct: 42 ISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLFKG 97
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 33.1 bits (72), Expect = 0.20
Identities = 23/91 (25%), Positives = 34/91 (37%)
Frame = +1
Query: 262 VSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIR 441
+ P + VK+ Q + + I YK + AF +I K++G L W G V R
Sbjct: 127 IGSAIATPTDLVKIRFQAVKIGETIP----YKNMFHAFYKIAKKEGFLGLWTGMKPTVKR 182
Query: 442 YFPTQALNFAFKDKYKQVFLGGVTRRRILAL 534
D K + L R +AL
Sbjct: 183 AACISGTQIPTYDHTKHLLLNAELMREGVAL 213
>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 382 IPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQV 495
+P+E L W G F +VI F A+N AF+++YK++
Sbjct: 272 LPREVYLFYSWIGAFSSVINPFIYGAMNPAFREEYKKI 309
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 31.9 bits (69), Expect = 0.45
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +1
Query: 238 PGWRYLAAVSKTAVA-----PNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 402
P WR+++ + VA P + V+ L VQ +S + ++ Y GIV A RI E+G+
Sbjct: 28 PLWRFVSGATAGVVATASTHPLDVVRARLTVQDMSTRSISN--YTGIVSALRRIHIEEGI 85
Query: 403 LSFWRGNFVNVIRYFP 450
++G +++ P
Sbjct: 86 RGLYKGLVPSLVSIAP 101
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 265 SKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 423
S+ VA ER +L+ Q Q +D RY+G +D+F + +G L +RG+
Sbjct: 278 SRQTVACPERCGVLMASQGKRGQYMSDARYRGHLDSFRGDARYRGHLDSFRGD 330
>SB_34206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 382 IPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQV 495
+P+E +L W G +VI F A+N F+D+YK++
Sbjct: 139 LPREVYVLYTWLGTLSSVINPFIYGAMNPVFRDEYKKL 176
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 629 RRLDGYVRSRGGTRSTERWLRRHHR-RPDYQRSNARMRLLVTP 504
R+++ R +GG R+T+ ++H R +PD +R+ R+ TP
Sbjct: 865 RKVEERARHKGGNRATQEREKKHRRNQPDKRRTQMRIPRKGTP 907
>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 303 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 404
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 83 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 117
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 303 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 404
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 217
>SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = -2
Query: 596 GTRSTERWLRRHHRRPDYQ-RSNARMRLLVTPPRNTCLYLSLKAKLSAWVGKYLMTLTKL 420
G+ S W R R +Q RS AR P C Y K+ S ++L + L
Sbjct: 7 GSVSKPWWFRCARDRLPFQWRSRARRNHGWKPSLKGCNYHLAKSTFSIRNVEFLFAVRTL 66
Query: 419 PRQNERRPCSLGMRTKASTI 360
P + ER +RT TI
Sbjct: 67 PTREERITADSKLRTSFETI 86
>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 404
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 303 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 404
A+ S RQQ R RP +GY +R R +P+ SP
Sbjct: 261 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 295
>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
Length = 965
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 255 EIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRVWGI 124
++PP R +A + + FD+ + I TR RGG ++ WG+
Sbjct: 539 DLPPDRTEVAPSFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 581
>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
Length = 550
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 303 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 404
A+ S RQQ R RP GY +R R +P+ SP
Sbjct: 84 ASGSNQRQQQARGRPQASGYNQRSRRGYPRARASP 118
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 352 YKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQVF--LGG 507
Y+G++ + KE+G+ +F+R + P Q L+F + ++ LGG
Sbjct: 32 YRGVIHCATSVFKEEGIRAFYRSYTTQLSMNIPFQTLHFTVYEYARKALNPLGG 85
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +1
Query: 283 PNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQA 459
P + VK Q + +Y G D +I G+ +F +G ++R FPT A
Sbjct: 377 PVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFGQGLLATILRGFPTNA 435
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +1
Query: 262 VSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIR 441
++KT V + + L+ V ++ Y G +D ++ +GL +RG + R
Sbjct: 267 LAKTRVQVQGQGQKLVHVFFLTNTETKQMAYTGSLDCLKKVFHSEGLRGCFRGMAITTTR 326
Query: 442 YFPTQALNF 468
P AL F
Sbjct: 327 DIPAFALYF 335
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +1
Query: 283 PNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQAL 462
P + +K+ LQ + K +KG +D F++ + +GL ++G ++ P+ AL
Sbjct: 40 PLDLLKVRLQAMNQVKP-GETAPFKGAMDCFMKTVRLEGLRGLYKGMLSPLLMATPSTAL 98
Query: 463 NF 468
F
Sbjct: 99 TF 100
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +1
Query: 265 SKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRY 444
+ AV P + +K LQ+ + + + Y GI+D +I +GL +F++G +I
Sbjct: 219 ASVAVNPLDVIKTRLQLLNRPQ---GEPNYNGIIDCAKKIYSNEGLAAFYKGAVPRMIVI 275
Query: 445 FP 450
P
Sbjct: 276 AP 277
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +1
Query: 283 PNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQAL 462
P + +K+ LQ + K YK D F +I + +G+ +RG V ++ P +
Sbjct: 58 PLDTIKVRLQAMPLPKP-GEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVPILNSIPNTTV 116
Query: 463 NFA 471
F+
Sbjct: 117 LFS 119
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 319 HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVI-RYFPTQALNFAF 474
H+++ ++ Q KG + F +IP + SF R ++ + +FP Q ++F +
Sbjct: 29 HIAQVLSLKQDTKGKLLFFFKIPSLPIITSFIRAKPISFLAHHFPVQGMSFTY 81
>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 255 EIPPARKSLANATGSARFDILFDYVIFTR*ICRGGSCGTRVWGI 124
++PP R +A + FD+ + I TR RGG ++ WG+
Sbjct: 1266 DLPPDRTEVAPPFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 1308
>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 406
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 303 AAPSTARQQADRRRPALQGYRRR-LRAHPQGAGSP 404
A+ S RQQ R RP +GY +R R +P+ +P
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARATP 217
>SB_23920| Best HMM Match : Mito_carr (HMM E-Value=0.00039)
Length = 54
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 358 GIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQV 495
G+V + G +RGN ++R P ++ F ++YK++
Sbjct: 1 GVVHVLTQTYTTNGFTGLFRGNSATMMRVVPYASIQFTSHEQYKKL 46
>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
Length = 1115
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 121 RDPPYACAATPTSTYSPSEDHIIE 192
+D YAC P TY E H++E
Sbjct: 596 KDNEYACKPCPKGTYMDLEGHVVE 619
>SB_6061| Best HMM Match : NACHT (HMM E-Value=0.00065)
Length = 879
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 342 GGDLLADVLYLEQQLDTFVGCYGGLGDGGEIPPARKSLANAT 217
G +A++L Q L+TF C +GD G I A + N+T
Sbjct: 730 GAIAIAEMLSKNQLLETFRLCLYQIGDEGAIAIANALMTNST 771
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 283 PNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQ 456
P +K+ LQVQ + Y G +DAF ++ + +G+ ++G V+ F Q
Sbjct: 35 PANLIKIRLQVQRKTTL------YNGSLDAFTKVIRTEGVRGLYKGYLVSCAGLFAGQ 86
>SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 439 RYFPTQALNFAFKDKYKQVFLGGVTRRRILALLRW*SGLRWCRRSHLSVLR 591
RYFP + +D K+ F+G + RIL+ + S W ++ S+ R
Sbjct: 244 RYFPEISPTLTPQDILKESFIGSLLGARILSETKNMSSFYWTKKYKKSLAR 294
>SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)
Length = 343
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 382 IPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQVFLGGVTRRRILALL 537
+P+E L + G +VI F A+N F+++YK+VF R R A++
Sbjct: 263 LPRELYFLYTYVGVLSSVINPFIYGAMNPMFREEYKKVFRIATFRGRNSAVV 314
>SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40)
Length = 368
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 382 IPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQVFLGGVTRR 519
+P+E +L + G +VI F A+N FK++YK++ T R
Sbjct: 267 LPREVYVLYSFLGGLSSVINPFIYGAMNPIFKEQYKKILRPRCTGR 312
>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 866
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 385 PKEQGLLSFWRGNFVNVIRYFPTQALNFAFKDKYKQVFL 501
P+E L W G +VI F +N F++++K+++L
Sbjct: 815 PRELYLFYSWLGALSSVINPFIYGVMNPMFREEFKRIYL 853
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,510,709
Number of Sequences: 59808
Number of extensions: 420305
Number of successful extensions: 1112
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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