Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0356
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   157   1e-40
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   157   1e-40

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  157 bits (380), Expect = 1e-40
 Identities = 71/87 (81%), Positives = 79/87 (90%)
 Frame = +1

Query: 256 AAVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNV 435
           AA+SKT VAP ERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN  NV
Sbjct: 21  AAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANV 80

Query: 436 IRYFPTQALNFAFKDKYKQVFLGGVTR 516
           IRYFPTQALNFAFKDKYKQVFLGGV +
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFLGGVDK 107



 Score = 52.0 bits (119), Expect = 5e-09
 Identities = 25/38 (65%), Positives = 25/38 (65%)
 Frame = +2

Query: 524 FWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVG 637
           F RYF            TSLCFVYPLDFARTRLAADVG
Sbjct: 111 FLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVG 148



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 197 MSNLADPVAFAKDFLAGGI 253
           MS LADPVAFAKDFLAGG+
Sbjct: 1   MSGLADPVAFAKDFLAGGV 19



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 343 DQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKD 480
           ++ + G+ +   +I K  G+   +RG  V+V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  157 bits (380), Expect = 1e-40
 Identities = 71/87 (81%), Positives = 79/87 (90%)
 Frame = +1

Query: 256 AAVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFVNV 435
           AA+SKT VAP ERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN  NV
Sbjct: 21  AAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANV 80

Query: 436 IRYFPTQALNFAFKDKYKQVFLGGVTR 516
           IRYFPTQALNFAFKDKYKQVFLGGV +
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFLGGVDK 107



 Score = 52.0 bits (119), Expect = 5e-09
 Identities = 25/38 (65%), Positives = 25/38 (65%)
 Frame = +2

Query: 524 FWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVG 637
           F RYF            TSLCFVYPLDFARTRLAADVG
Sbjct: 111 FLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVG 148



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 197 MSNLADPVAFAKDFLAGGI 253
           MS LADPVAFAKDFLAGG+
Sbjct: 1   MSGLADPVAFAKDFLAGGV 19



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 343 DQRYKGIVDAFVRIPKEQGLLSFWRGNFVNVIRYFPTQALNFAFKD 480
           ++ + G+ +   +I K  G+   +RG  V+V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,051
Number of Sequences: 438
Number of extensions: 3620
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)