BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0354 (707 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 27 2.0 SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 4.6 SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.0 >SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 977 Score = 27.5 bits (58), Expect = 2.0 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Frame = +2 Query: 338 IATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV---KESQVYQKTESVIK 502 + +L T+L +R +SDL + G+ +I + +N ++N ES + + SVIK Sbjct: 176 VVSLVTILVPPMRMASDLVGQSGLDHLNKIMQSLNFSVENFFPSDESVSFSSSSSVIK 233 >SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1480 Score = 26.2 bits (55), Expect = 4.6 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = +2 Query: 266 GLTPEQADQLRAE--WSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEI 427 GL E + + R+ W E+A + L+ +++SK+ SSD+ L W E+ Sbjct: 270 GLKEESSHEPRSSQHWKNEVAMKD----LLKNLIKSKLESSSDVNTPLIFDPWPEL 321 >SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1379 Score = 25.4 bits (53), Expect = 8.0 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +2 Query: 596 PSKNASVRLMKTSRGKVASRSNSTQSFD 679 P N +V +KTS K A+ + S + FD Sbjct: 215 PFSNPAVEKLKTSASKQAAEAQSLREFD 242 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,761,652 Number of Sequences: 5004 Number of extensions: 54957 Number of successful extensions: 144 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 138 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 144 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 329179816 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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