Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0354
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565...    30   1.6  
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869...    29   2.7  
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773           29   3.6  
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314           29   4.8  
04_03_0745 + 19244089-19244521,19244638-19244723,19245090-192452...    29   4.8  
02_01_0286 + 1921049-1921726                                           29   4.8  

>03_05_0754 +
           27452203-27452242,27452360-27455611,27456480-27456533,
           27456774-27456872,27456948-27457012,27457476-27457575,
           27458326-27458408,27458494-27458569,27458920-27459698
          Length = 1515

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 287 DQLRA---EWSRELARVEDEIATLRTVLQSKIRQSSDLKRKL 403
           D+ RA   EW  + + + D+I TL   L SK R + D + +L
Sbjct: 220 DEFRAAKKEWGSDRSMLVDQIGTLEVNLDSKTRMAEDFRSRL 261


>05_07_0116 -
           27785083-27786123,27786201-27786278,27786364-27786976,
           27787128-27787213,27787316-27787438,27787600-27787734,
           27787930-27788019,27788796-27788981,27789560-27789661,
           27789787-27789900,27790010-27790153,27790260-27790325,
           27790895-27791056,27791668-27791916
          Length = 1062

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +2

Query: 278 EQADQLRAEWSRELARVEDEIATLRT-VLQSKIRQSSDLKR 397
           E+ D LRAE + +L+  E+EIA L T + Q++I  ++ + R
Sbjct: 674 EREDALRAELASQLSEKEEEIARLNTKINQTEIHATNLISR 714


>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
          Length = 944

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 275 PEQADQLRAEWSRELARVEDEIATLR 352
           P ++DQL   W R +   +DE+A+L+
Sbjct: 61  PPESDQLARAWLRRVQEAQDEVASLK 86


>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
          Length = 1056

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 386 PSFDGSCFAVQFSKSRFHLRHGLARDSIQRVTGL 285
           PS  G+C A+QF   + +L HGL    + ++ GL
Sbjct: 543 PSTLGNCLALQFLYLQANLLHGLIPKELNKLRGL 576


>04_03_0745 +
           19244089-19244521,19244638-19244723,19245090-19245221,
           19245335-19245499,19245602-19245892
          Length = 368

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 528 HRRHHGR-RVQQARSDAQLGVFPVHRRTR 611
           H   HG   V Q   DAQ+GVFPV R  R
Sbjct: 257 HLSSHGAMEVDQDTRDAQVGVFPVERGER 285


>02_01_0286 + 1921049-1921726
          Length = 225

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 510 REDVFDHRRHHGRRVQQARSDAQLGVFPVHRRTRR 614
           R+D    RRH G      R +   G FPV RR RR
Sbjct: 91  RDDRGSWRRHSGGNAIGLRQERASGGFPVKRRRRR 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,224,965
Number of Sequences: 37544
Number of extensions: 334078
Number of successful extensions: 817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)