Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0354
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 53 3e-07
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 32 0.52
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 30 2.1
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0) 30 2.1
SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22) 28 6.5
SB_45298| Best HMM Match : DUF827 (HMM E-Value=0.058) 28 8.5
SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3) 28 8.5
SB_48386| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +2
Query: 317 LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQK 484
L +E+EI TL+ L K Q +DLKR+LGIT W +I E + V++S+ Y K
Sbjct: 73 LRHIEEEITTLKQALARKENQLADLKRELGITAWSQIKEGLGNTYHGVQQSRAYNK 128
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +1
Query: 406 HHGVERDHRGRQSGFEKRQRKPSIPKN*ICDKNDPEKTSSIIGGITAGVSSKLGQMRNSE 585
+HGV++ + K + S K + D + EKT S + ++ + KLG++R S
Sbjct: 117 YHGVQQSR-----AYNKLSQGASATKVVLVDAS--EKTVSAVKTASSATAKKLGEIRQSN 169
Query: 586 SFRSIE 603
SF+S E
Sbjct: 170 SFQSFE 175
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 281 QADQLRAEWSRELARV-EDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKN 457
Q +QL E RE+ ++ + + LRT ++ +LK KL VW E E+ + +
Sbjct: 113 QKEQLHREKEREIIQIIKQKDDALRTAQHEWAKEREELKGKLRAEVWSEAKEEAKKDSER 172
Query: 458 VK 463
K
Sbjct: 173 EK 174
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 427 HRGRQSGFEKRQRKPSIPKN*ICDKNDPEKTSSII---GGITAGVSSKLGQMRNSESFRS 597
+RG Q + +KPS P CD D T S + GG+ +G + G + + E RS
Sbjct: 1393 YRGMQKPIAEPLKKPSQPNKQACDSFDVSSTLSNVTLEGGVKSGKFTDRGVVGSMEECRS 1452
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Frame = +2
Query: 251 SYELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKL--------G 406
SY++A L + ++L+ +R+L E+EI + L+ R+++DLK KL G
Sbjct: 120 SYDIANL---ERNELKTR-NRDL---EEEITAKKAALKQISRENTDLKSKLELLMKDQSG 172
Query: 407 ITVWKEITEDVNQGLKNVKESQ 472
V K++T V + +N+K Q
Sbjct: 173 AAVIKDLTRQVEELRENLKAKQ 194
>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 805
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/67 (23%), Positives = 34/67 (50%)
Frame = +2
Query: 281 QADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV 460
+AD+LRAE + R+E EI L+ ++ +L++KL V + +++ + +
Sbjct: 157 EADELRAELKSNIERLEGEIEGKNKALEEAKKRIDELEQKLLANVPVDTAKEIQTYREKI 216
Query: 461 KESQVYQ 481
+ + Q
Sbjct: 217 NDLEKTQ 223
>SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)
Length = 431
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 409 HGVERDHRGRQSGFEKRQRKPSIPKN*ICDKND 507
HG RG Q+ +KR P +PK+ + K D
Sbjct: 369 HGENMIRRGSQASTQKRNMTPIVPKHVMAPKRD 401
>SB_45298| Best HMM Match : DUF827 (HMM E-Value=0.058)
Length = 333
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/69 (21%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +2
Query: 269 LTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITED---V 439
+T ++ D+L+++ + L ++E+ ++ +L ++ +LKRK + +E TE+ +
Sbjct: 76 MTEKERDELKSKMNTGL---KEELMEVKNLLSKTKQERDELKRKAATGLKEEFTEELQAL 132
Query: 440 NQGLKNVKE 466
N+ ++ +K+
Sbjct: 133 NEKVEKLKD 141
>SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3)
Length = 866
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +2
Query: 269 LTPEQADQLRA---EWSRELARV--EDEIATLRT---VLQSKIRQSSDLKRKLGITVWKE 424
+TP+Q + LRA EW R V +++ +R Q + R+ ++++L ++
Sbjct: 252 MTPDQVEALRARYREWRRRRKEVMTPEQLEIIRRGNRERQRRRRERLGVRKRLASNQFRG 311
Query: 425 ITEDVNQGLKNVK 463
++ V QG+KN++
Sbjct: 312 ASDAVIQGIKNLQ 324
>SB_48386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 260 LAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGIT 412
L T + A+ LR +E +DEI TLR +L + R++S + KL T
Sbjct: 521 LLARTSQSAENLR----KERNAFDDEIETLRQMLADRTRRNSQTEDKLSGT 567
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,307,826
Number of Sequences: 59808
Number of extensions: 404287
Number of successful extensions: 1120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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