Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0354
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical pr...    66   2e-11
U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical pr...    32   0.46 
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p...    30   1.9  
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p...    30   1.9  
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p...    30   1.9  
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p...    30   1.9  
AL021171-5|CAE17871.1|  688|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC024772-5|AAF60539.1|  407|Caenorhabditis elegans Hypothetical ...    28   5.7  
AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z68303-6|CAD89754.1|  708|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z68303-5|CAA92639.2|  706|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z34533-4|CAA84299.2|  577|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    27   9.9  

>Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical
           protein F13E6.1 protein.
          Length = 195

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 28/65 (43%), Positives = 47/65 (72%)
 Frame = +2

Query: 314 ELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTES 493
           EL + E+EI+TL+ VL ++ + +++LKRKLG+T + E+++D+N+ LK V ++  YQKT  
Sbjct: 67  ELDKTEEEISTLKQVLSARQKHAAELKRKLGLTPFSELSQDINRSLKTVTDTDAYQKTAE 126

Query: 494 VIKTT 508
           V   T
Sbjct: 127 VAAAT 131



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 490 ICDKNDPEKTSSIIGGITAGVSSKLGQMRNSESFRSIEERVGSAYENVK 636
           + D +  +KT+ +    +  V  K   MRNS  F+S E ++GSA  N K
Sbjct: 115 VTDTDAYQKTAEVAAATSDTVKEKWNDMRNSSLFKSFESKLGSALNNAK 163


>U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical
           protein W05H9.1 protein.
          Length = 414

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 15/71 (21%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
 Frame = +2

Query: 287 DQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKN 457
           ++ + + +  L++V D +      L+ + ++ ++ K+K     I  WKE+++ V + +++
Sbjct: 59  EETQKKLNETLSKVSDAVKQRADELEKEKQEKAEAKKKEAEAAIEKWKEVSQQVGEFVES 118

Query: 458 VKESQVYQKTE 490
           VKE +  ++ E
Sbjct: 119 VKEKKQAKEQE 129


>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
           protein F35D11.11a protein.
          Length = 1840

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 278 EQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRK 400
           EQ D  RAEWS E  R+E       T LQ ++++  D+ ++
Sbjct: 867 EQNDGDRAEWSNERNRLESSKNEAVTELQERVQKLEDVVKE 907


>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
           protein F35D11.11c protein.
          Length = 1898

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 278 EQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRK 400
           EQ D  RAEWS E  R+E       T LQ ++++  D+ ++
Sbjct: 867 EQNDGDRAEWSNERNRLESSKNEAVTELQERVQKLEDVVKE 907


>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
           protein F35D11.11d protein.
          Length = 1671

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 278 EQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRK 400
           EQ D  RAEWS E  R+E       T LQ ++++  D+ ++
Sbjct: 627 EQNDGDRAEWSNERNRLESSKNEAVTELQERVQKLEDVVKE 667


>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
           protein F35D11.11b protein.
          Length = 1911

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 278 EQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRK 400
           EQ D  RAEWS E  R+E       T LQ ++++  D+ ++
Sbjct: 867 EQNDGDRAEWSNERNRLESSKNEAVTELQERVQKLEDVVKE 907


>AL021171-5|CAE17871.1|  688|Caenorhabditis elegans Hypothetical
           protein H04D03.4 protein.
          Length = 688

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 186 YFTMKNSYGVK*MKNIKLI--FL*KSNRTQNFYVCSTLISQALLVKIVTNIE 37
           Y  +   Y +K  K++K I  FL  SNR+ +   C  L+SQ  ++  V N++
Sbjct: 323 YLDLHRGYHMK--KSLKRIETFLSVSNRSYDLIKCLKLVSQVTMISKVNNVQ 372


>AC024772-5|AAF60539.1|  407|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4a protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +3

Query: 21  YLPTITRYWSQFSLKVLGLLVCYI---HKSFVFYYFS 122
           Y P I   W    + V+GL+V  I   H S +FY FS
Sbjct: 22  YSPPIFLEWKMVFVGVIGLIVALISIVHNSLLFYTFS 58


>AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4b protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +3

Query: 21  YLPTITRYWSQFSLKVLGLLVCYI---HKSFVFYYFS 122
           Y P I   W    + V+GL+V  I   H S +FY FS
Sbjct: 22  YSPPIFLEWKMVFVGVIGLIVALISIVHNSLLFYTFS 58


>Z68303-6|CAD89754.1|  708|Caenorhabditis elegans Hypothetical
           protein ZK809.5b protein.
          Length = 708

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
 Frame = +2

Query: 269 LTPEQADQLRAEWSRELARVEDEIATLR-----TVLQSKIRQSSDLKRKLGITVWKEIT- 430
           L  E  ++ R EW R++    +E+   R       L+S  ++ SD+  +  I++WK+ T 
Sbjct: 188 LNKENFEKCRDEWQRKMELEMEELRLERERIEVASLKSTDKRRSDMAIEAEISMWKKRTA 247

Query: 431 ---EDVNQGLKNVKE 466
               D N+  K V E
Sbjct: 248 ELEHDANETRKRVGE 262


>Z68303-5|CAA92639.2|  706|Caenorhabditis elegans Hypothetical
           protein ZK809.5a protein.
          Length = 706

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
 Frame = +2

Query: 269 LTPEQADQLRAEWSRELARVEDEIATLR-----TVLQSKIRQSSDLKRKLGITVWKEIT- 430
           L  E  ++ R EW R++    +E+   R       L+S  ++ SD+  +  I++WK+ T 
Sbjct: 186 LNKENFEKCRDEWQRKMELEMEELRLERERIEVASLKSTDKRRSDMAIEAEISMWKKRTA 245

Query: 431 ---EDVNQGLKNVKE 466
               D N+  K V E
Sbjct: 246 ELEHDANETRKRVGE 260


>AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical
           protein Y39E4B.2 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 374 RQSSDLKRKLGITVWKEITEDVNQGLKNVKES 469
           ++ S LK KLGIT W ++ + + +  K +K S
Sbjct: 204 KEYSRLKMKLGITSWMKLKDPIEELKKIIKTS 235


>Z34533-4|CAA84299.2|  577|Caenorhabditis elegans Hypothetical
           protein B0285.6 protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 539 MPPMIEDVFSGSFLSQIQFFGILGFL*RFSNP 444
           +PPMI  +FS  F+ Q+QF G    +  F  P
Sbjct: 262 IPPMIFYMFSSWFIVQLQFLGPRHLMGMFREP 293


>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
            isoform a protein.
          Length = 1702

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 478  PKN*ICDKNDPEKTSSIIGGITAGVSSKLGQMRNSESFRSIEERV 612
            P+N +   + P+K + +I  + A V S   + R  + F   E+ +
Sbjct: 937  PENFLEQPDSPDKVTEVINNVVASVLSSPDEFRGQKQFTKTEKHL 981


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,128,039
Number of Sequences: 27780
Number of extensions: 302767
Number of successful extensions: 868
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)