Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0354
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.53 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.93 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.6  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   2.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.0  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   6.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 299 AEWSRELARVEDEIATLRTVL 361
           +E  R+L R+ED++ATLR  L
Sbjct: 559 SEKFRKLIRIEDDVATLRMKL 579


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 299 AEWSRELARVEDEIATLRTVL 361
           +E  R+L R+ED +ATLR  L
Sbjct: 612 SEKFRKLIRIEDNVATLRMKL 632


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 292 LVCLLGCEAGQLIGVCMSPATPV 224
           L+CLL   A  +IGV    ATPV
Sbjct: 12  LICLLNETAKAIIGVDECQATPV 34


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 266 GLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGI 409
           G TPE+     A    +LAR++ E A  R + +   R+   L R LG+
Sbjct: 15  GGTPEEKRPRTAFSGEQLARLKREFAENRYLTE---RRRQQLSRDLGL 59


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 229 EWQGTYILL*VGRPHTRAGRPVTR*MESRASPCRR 333
           +W+  YIL  + +  TRA   ++    S+ SP R+
Sbjct: 231 QWEEVYILQNLQKKRTRAEGRLSSDNMSKKSPVRK 265


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 389 LKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIK 502
           + RK+G +V   +    N GL  +K +  ++ TE   K
Sbjct: 29  MTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTEIKFK 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,961
Number of Sequences: 438
Number of extensions: 3442
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)