Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0353
(721 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O75306 Cluster: NADH dehydrogenase [ubiquinone] iron-su... 155 1e-36
UniRef50_P93306 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 150 4e-35
UniRef50_A7DLV5 Cluster: NADH dehydrogenase; n=1; Methylobacteri... 133 5e-30
UniRef50_Q9PGJ2 Cluster: NADH-ubiquinone oxidoreductase, NQO4 su... 132 1e-29
UniRef50_Q4P4N9 Cluster: Putative uncharacterized protein; n=1; ... 130 4e-29
UniRef50_P56908 Cluster: NADH-quinone oxidoreductase subunit D 2... 118 2e-25
UniRef50_P15689 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 118 2e-25
UniRef50_A6FCN3 Cluster: NuoD2 NADH I CHAIN D; n=1; Moritella sp... 112 7e-24
UniRef50_A3ERJ4 Cluster: NADH ubiquinone oxidoreductase subunit ... 109 5e-23
UniRef50_Q1AVI6 Cluster: NADH dehydrogenase; n=1; Rubrobacter xy... 105 1e-21
UniRef50_Q2S5J0 Cluster: NADH dehydrogenase I, D subunit; n=4; B... 104 2e-21
UniRef50_Q67KN9 Cluster: NADH dehydrogenase I subunit D; n=19; F... 104 3e-21
UniRef50_A7CUG2 Cluster: NADH dehydrogenase I, D subunit; n=1; O... 103 4e-21
UniRef50_A7H9V5 Cluster: NADH dehydrogenase; n=4; Cystobacterine... 103 6e-21
UniRef50_Q190M8 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 102 8e-21
UniRef50_Q3ZXR8 Cluster: Proton-translocating NADH-quinone oxido... 101 1e-20
UniRef50_A5UXK3 Cluster: NADH dehydrogenase; n=3; Chloroflexi (c... 100 7e-20
UniRef50_Q1IS59 Cluster: NADH dehydrogenase I, D subunit; n=2; A... 99 1e-19
UniRef50_P21301 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 99 1e-19
UniRef50_Q6MDR3 Cluster: Putative NADH-ubiquinone oxidoreductase... 97 5e-19
UniRef50_Q9PM99 Cluster: NADH-quinone oxidoreductase subunit D; ... 97 5e-19
UniRef50_A3ZL03 Cluster: NADH dehydrogenase; n=1; Blastopirellul... 95 2e-18
UniRef50_Q67P19 Cluster: NADH dehydrogenase I subunit D; n=1; Sy... 94 4e-18
UniRef50_Q56220 Cluster: NADH-quinone oxidoreductase subunit 4; ... 93 5e-18
UniRef50_Q5DUX5 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 93 5e-18
UniRef50_Q979M3 Cluster: NADH dehydrogenase I chain D; n=6; Ther... 93 6e-18
UniRef50_A7H9U8 Cluster: NADH dehydrogenase; n=2; Anaeromyxobact... 92 1e-17
UniRef50_A4XCQ7 Cluster: NADH dehydrogenase; n=5; Actinomycetale... 91 2e-17
UniRef50_Q8KEC0 Cluster: NADH dehydrogenase I, 49 kDa subunit; n... 91 3e-17
UniRef50_P65570 Cluster: NADH-quinone oxidoreductase subunit D; ... 91 3e-17
UniRef50_Q9P9G0 Cluster: F420H2 dehydrogenase subunit FpoD; n=6;... 90 4e-17
UniRef50_A2Q588 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 86 7e-16
UniRef50_A1ALP2 Cluster: NADH dehydrogenase; n=1; Pelobacter pro... 86 9e-16
UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D... 86 9e-16
UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aqui... 85 1e-15
UniRef50_P56753 Cluster: NAD(P)H-quinone oxidoreductase chain H,... 84 3e-15
UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8; Bac... 83 5e-15
UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 83 7e-15
UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1; Bd... 83 7e-15
UniRef50_Q8F7Q2 Cluster: NADH dehydrogenase I, D subunit; n=8; B... 82 1e-14
UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d; ... 82 1e-14
UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 79 1e-13
UniRef50_Q1K3R4 Cluster: NADH dehydrogenase; n=4; Deltaproteobac... 77 6e-13
UniRef50_Q9YC29 Cluster: NuoD homolog; n=4; Thermoprotei|Rep: Nu... 73 5e-12
UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;... 72 1e-11
UniRef50_A0L9R4 Cluster: NADH dehydrogenase; n=2; Bacteria|Rep: ... 71 2e-11
UniRef50_A0RY68 Cluster: NADH-ubiquinone oxidoreductase, subunit... 71 3e-11
UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase, ... 69 2e-10
UniRef50_Q9X0U3 Cluster: NADH dehydrogenase, 49 kDa subunit, put... 66 6e-10
UniRef50_Q980H3 Cluster: NADH dehydrogenase subunit D; n=2; Sulf... 66 8e-10
UniRef50_Q8ZWW9 Cluster: NADH-ubiquinone oxidoreductase subunit;... 64 3e-09
UniRef50_A1RZ50 Cluster: NADH dehydrogenase; n=1; Thermofilum pe... 60 4e-08
UniRef50_Q8RDB4 Cluster: NADH:ubiquinone oxidoreductase 49 kD su... 60 7e-08
UniRef50_A7I491 Cluster: NADH dehydrogenase; n=2; cellular organ... 59 9e-08
UniRef50_O28445 Cluster: F420H2:quinone oxidoreductase, 45 kDa s... 58 2e-07
UniRef50_A3DM94 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 58 2e-07
UniRef50_Q0W3I1 Cluster: Ech hydrogenase, subunit E; n=1; uncult... 58 3e-07
UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 56 7e-07
UniRef50_Q9V0S5 Cluster: NuoD NADH dehydrognease I, subunit D; n... 54 5e-06
UniRef50_A7C1S4 Cluster: NADH-ubiquinone oxidoreductase subunit;... 53 6e-06
UniRef50_A1AUU6 Cluster: NADH dehydrogenase (Ubiquinone) precurs... 53 8e-06
UniRef50_A3DKH4 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 53 8e-06
UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n... 52 1e-05
UniRef50_Q6AB32 Cluster: Putative NADH dehydrogenase; n=1; Propi... 51 3e-05
UniRef50_Q57935 Cluster: Uncharacterized protein MJ0515; n=9; Eu... 50 4e-05
UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 50 8e-05
UniRef50_Q8TY43 Cluster: Ni,Fe-hydrogenase III large subunit; n=... 48 3e-04
UniRef50_A3CUR5 Cluster: NADH dehydrogenase; n=3; Methanomicrobi... 46 7e-04
UniRef50_Q8U0Z6 Cluster: Mbh12 membrane bound hydrogenase alpha;... 46 0.001
UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein... 46 0.001
UniRef50_Q1PZL4 Cluster: Similar to membrane-bound [NiFe]-hydrog... 46 0.001
UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 46 0.001
UniRef50_P31895 Cluster: Carbon monoxide-induced hydrogenase; n=... 45 0.002
UniRef50_Q2FTW4 Cluster: NADH dehydrogenase; n=2; Methanomicrobi... 44 0.003
UniRef50_Q0BPG8 Cluster: Formate hydrogenlyase subunit 5; n=1; G... 44 0.004
UniRef50_Q4X2T6 Cluster: Putative uncharacterized protein; n=1; ... 43 0.007
UniRef50_Q3ZW31 Cluster: Hydrogenase, group 4, HycE subunit; n=3... 43 0.009
UniRef50_Q24ST8 Cluster: Formate hydrogenlyase subunit 5; n=2; D... 42 0.015
UniRef50_Q9UYN4 Cluster: Hydrogenase 4, component G or formate h... 42 0.020
UniRef50_P77329 Cluster: Hydrogenase-4 component G; n=19; Bacter... 42 0.020
UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precurs... 42 0.020
UniRef50_UPI000155B933 Cluster: PREDICTED: similar to NADH dehyd... 41 0.027
UniRef50_UPI00015BC86A Cluster: UPI00015BC86A related cluster; n... 40 0.047
UniRef50_Q2RXM4 Cluster: NADH-ubiquinone oxidoreductase; n=1; Rh... 40 0.062
UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;... 40 0.062
UniRef50_A6DBV4 Cluster: Ech hydrogenase, subunit EchE, putative... 40 0.082
UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium ce... 39 0.14
UniRef50_Q10884 Cluster: POSSIBLE FORMATE HYDROGENASE HYCE; n=10... 38 0.25
UniRef50_Q0LPD5 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 37 0.44
UniRef50_A5FW46 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 37 0.44
UniRef50_Q6APF2 Cluster: Related to hydrogenase, component E-for... 37 0.58
UniRef50_Q8THY6 Cluster: Hydrogenase-3, subunit E; n=4; Methanom... 36 0.76
UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 35 2.3
UniRef50_A7HGW8 Cluster: NADH-ubiquinone oxidoreductase chain 49... 34 3.1
UniRef50_Q82AU3 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_Q3W8F3 Cluster: Glycosyl transferase, family 2; n=2; Fr... 34 4.1
UniRef50_Q6L8F0 Cluster: Medium-chain-fatty-acid--CoA ligase; n=... 33 5.4
UniRef50_Q4DZG8 Cluster: Putative uncharacterized protein; n=2; ... 33 5.4
UniRef50_A6UVJ6 Cluster: Hydrogenase, component E-formate hydrog... 33 5.4
UniRef50_Q58433 Cluster: Uncharacterized protein MJ1027; n=6; Me... 33 5.4
UniRef50_Q89GK2 Cluster: Blr6343 protein; n=11; Alphaproteobacte... 33 7.1
UniRef50_A2X2W4 Cluster: Putative uncharacterized protein; n=1; ... 33 9.4
>UniRef50_O75306 Cluster: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial precursor; n=305;
cellular organisms|Rep: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial precursor - Homo
sapiens (Human)
Length = 463
Score = 155 bits (375), Expect = 1e-36
Identities = 72/84 (85%), Positives = 75/84 (89%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHPAAHGVLRLV+EL GE VR DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM
Sbjct: 86 PQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMM 145
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
CNEQ YSLAVEKLLNI P RA++
Sbjct: 146 CNEQAYSLAVEKLLNIRPPPRAQW 169
Score = 134 bits (323), Expect = 3e-30
Identities = 61/70 (87%), Positives = 64/70 (91%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R LF EITRLLNHIMAV THALD+GA+TPFFWLFEEREKM EFYERVSGARMHAAYIRPG
Sbjct: 171 RVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPG 230
Query: 690 GVSLDMPLGL 719
GV D+PLGL
Sbjct: 231 GVHQDLPLGL 240
Score = 58.4 bits (135), Expect = 2e-07
Identities = 24/59 (40%), Positives = 35/59 (59%)
Frame = +2
Query: 83 VNSQRDGHRWFPDPDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNMILNFGP 259
+ R +W PD ++ +QF G VMYP + T KP P+N + P + V+N+ LNFGP
Sbjct: 28 IQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGP 86
>UniRef50_P93306 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=37; cellular organisms|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Arabidopsis thaliana
(Mouse-ear cress)
Length = 394
Score = 150 bits (363), Expect = 4e-35
Identities = 69/84 (82%), Positives = 74/84 (88%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHPAAHGVLRLVLE++GE V A+PHIGLLHRGTEKLIEYKTY QALPYFDR DYVSMM
Sbjct: 17 PQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRSDYVSMM 76
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
E YSLAVEKLLN +VPLRA+Y
Sbjct: 77 AQEHAYSLAVEKLLNCEVPLRAQY 100
Score = 124 bits (300), Expect = 2e-27
Identities = 54/73 (73%), Positives = 65/73 (89%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q R LF EITR+LNH++A+ THA+DVGALTPF W FEEREK++EFYERVSGARMHA++I
Sbjct: 99 QYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASFI 158
Query: 681 RPGGVSLDMPLGL 719
RPGGV+ D+PLGL
Sbjct: 159 RPGGVAQDLPLGL 171
>UniRef50_A7DLV5 Cluster: NADH dehydrogenase; n=1; Methylobacterium
extorquens PA1|Rep: NADH dehydrogenase -
Methylobacterium extorquens PA1
Length = 447
Score = 133 bits (321), Expect = 5e-30
Identities = 61/83 (73%), Positives = 68/83 (81%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHPAAHGVLRLVLELDGE V DPHIGLLHRGTEKLIE+KTY QA PYFDRLDYV+ M
Sbjct: 36 PQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYFDRLDYVAPM 95
Query: 436 CNEQCYSLAVEKLLNIDVPLRAK 504
E + LA+E+L I+VP RA+
Sbjct: 96 NQEHAFCLAIERLAGIEVPRRAQ 118
Score = 101 bits (243), Expect = 1e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q+ RTLF EI RLL+H++ V T A+DVGALTP W FEEREK+M FYER SGAR+HA Y
Sbjct: 118 QLIRTLFCEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHANYF 177
Query: 681 RPGGVSLDMPLGL 719
RPGGV D+P L
Sbjct: 178 RPGGVHQDLPPAL 190
>UniRef50_Q9PGJ2 Cluster: NADH-ubiquinone oxidoreductase, NQO4
subunit; n=105; Proteobacteria|Rep: NADH-ubiquinone
oxidoreductase, NQO4 subunit - Xylella fastidiosa
Length = 435
Score = 132 bits (318), Expect = 1e-29
Identities = 60/96 (62%), Positives = 71/96 (73%)
Frame = +1
Query: 220 RKESTQHDPELRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 399
++E + PQHPAAHGVLRL+LE+DGETV ADPHIGLLHRGTEKL E K + Q++
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSI 78
Query: 400 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 507
Y DRLDYVSMMCNE Y A+E L+ I P RA+Y
Sbjct: 79 GYMDRLDYVSMMCNEHAYVRAIETLIGIQAPERAQY 114
Score = 94.3 bits (224), Expect = 3e-18
Identities = 41/70 (58%), Positives = 55/70 (78%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q RT+F EITR+LNH+M +G++ALD+GA+ + F ERE++M+ YE +SGARMHAAY
Sbjct: 113 QYIRTMFDEITRILNHLMWLGSNALDLGAMAVMLYAFREREELMDVYEAISGARMHAAYY 172
Query: 681 RPGGVSLDMP 710
RPGGV D+P
Sbjct: 173 RPGGVYRDLP 182
>UniRef50_Q4P4N9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 498
Score = 130 bits (313), Expect = 4e-29
Identities = 70/110 (63%), Positives = 76/110 (69%), Gaps = 26/110 (23%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAAD--------------------------PHIGLLHRG 357
PQHPAAHGVLRL+LEL+GE + D PH+GLLHRG
Sbjct: 95 PQHPAAHGVLRLILELNGEEILRTDLAICKANIADSIQSCLFWPSGVCILQPHVGLLHRG 154
Query: 358 TEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 507
TEKLIEYKTYTQALPYFDRLDYVSMM NE CYS AVEKLLNI+VP RAK+
Sbjct: 155 TEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPERAKW 204
Score = 121 bits (291), Expect = 2e-26
Identities = 52/70 (74%), Positives = 61/70 (87%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RT+F EITR+LNH MAV +H +DVG LTPF W FEEREK+MEFYERVSGAR+HAAY+RPG
Sbjct: 206 RTMFGEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFYERVSGARLHAAYVRPG 265
Query: 690 GVSLDMPLGL 719
GV+ D+P GL
Sbjct: 266 GVAYDLPPGL 275
>UniRef50_P56908 Cluster: NADH-quinone oxidoreductase subunit D 2;
n=4; Bacteria|Rep: NADH-quinone oxidoreductase subunit D
2 - Rhizobium meliloti (Sinorhizobium meliloti)
Length = 404
Score = 118 bits (283), Expect = 2e-25
Identities = 55/91 (60%), Positives = 65/91 (71%)
Frame = +1
Query: 250 LRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 429
L PQHP+ HGVLRLVL+LDGE V DPHIG LHRGTEKL E TYTQ P DRLDY+
Sbjct: 24 LGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAESFTYTQIFPLTDRLDYLC 83
Query: 430 MMCNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
N ++LAVEKLL I+ P+RA+Y + +
Sbjct: 84 PPSNNLAFALAVEKLLGIEAPIRAQYIRVMM 114
Score = 68.1 bits (159), Expect = 2e-10
Identities = 29/72 (40%), Positives = 44/72 (61%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q R + AE+ R+ H++ G +D+GA+T + ERE +M+ E ++GARMH +Y
Sbjct: 108 QYIRVMMAELARISGHLLITGALPMDLGAMTALLYAMREREMIMDLLEMITGARMHTSYC 167
Query: 681 RPGGVSLDMPLG 716
R GGV D+P G
Sbjct: 168 RVGGVREDLPDG 179
>UniRef50_P15689 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=9; Intramacronucleata|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Paramecium tetraurelia
Length = 400
Score = 118 bits (283), Expect = 2e-25
Identities = 53/75 (70%), Positives = 61/75 (81%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHPAAHGVLRL+L+L+GE V D HIGLLHRG+EKL+E K Y Q++PYFDRLDYVSMM
Sbjct: 10 PQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSMPYFDRLDYVSMM 69
Query: 436 CNEQCYSLAVEKLLN 480
E Y LA+E LLN
Sbjct: 70 VQEHAYCLAIEALLN 84
Score = 97.9 bits (233), Expect = 2e-19
Identities = 40/65 (61%), Positives = 54/65 (83%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RT+F E+TR+LNH++A+ HALD+G+++ FW FEEREK+MEFYERV G RMHAA+ RP
Sbjct: 96 RTMFDELTRILNHMLAIACHALDIGSMSSIFWAFEEREKIMEFYERVCGRRMHAAFYRPN 155
Query: 690 GVSLD 704
V+L+
Sbjct: 156 EVNLN 160
>UniRef50_A6FCN3 Cluster: NuoD2 NADH I CHAIN D; n=1; Moritella sp.
PE36|Rep: NuoD2 NADH I CHAIN D - Moritella sp. PE36
Length = 405
Score = 112 bits (270), Expect = 7e-24
Identities = 53/91 (58%), Positives = 64/91 (70%)
Frame = +1
Query: 250 LRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 429
L PQHP+ HGVLRL+L++DGE V+ +PHIGLLHRGTEKL E TYTQ P DRLDY+
Sbjct: 24 LGPQHPSTHGVLRLLLQMDGEIVKRIEPHIGLLHRGTEKLCESFTYTQIFPLTDRLDYLC 83
Query: 430 MMCNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
N Y+LAVE LL I P RA+Y + +
Sbjct: 84 QPSNNLGYALAVEALLGIKAPERAQYIRVLM 114
Score = 68.9 bits (161), Expect = 1e-10
Identities = 30/72 (41%), Positives = 45/72 (62%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q R L AE++R+ H++ G +DVGA+T + +RE +M+ E +SGARMH ++
Sbjct: 108 QYIRVLMAELSRISGHLLITGALPMDVGAITTLLYTMRDREMIMDLMEMISGARMHTSFC 167
Query: 681 RPGGVSLDMPLG 716
R GGV D+P G
Sbjct: 168 RVGGVREDLPDG 179
>UniRef50_A3ERJ4 Cluster: NADH ubiquinone oxidoreductase subunit 7;
n=2; Leptospirillum|Rep: NADH ubiquinone oxidoreductase
subunit 7 - Leptospirillum sp. Group II UBA
Length = 423
Score = 109 bits (263), Expect = 5e-23
Identities = 48/84 (57%), Positives = 62/84 (73%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGVLR++LELDGE ++ + P +G LHRGTEK+ EY+TY Q +P DRLDYVS M
Sbjct: 46 PQHPSTHGVLRVLLELDGERIKRSVPDLGYLHRGTEKIAEYRTYNQIIPLTDRLDYVSAM 105
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
N + VEKLL + VP RA++
Sbjct: 106 ANNYAFVRTVEKLLQLKVPDRAEF 129
Score = 77.8 bits (183), Expect = 3e-13
Identities = 32/67 (47%), Positives = 49/67 (73%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RT+ AE+ R++NH+ +GT ALD+GA++ FF+ F ERE++++ +E + GAR+ Y R G
Sbjct: 131 RTIVAEVQRIVNHLFWLGTQALDIGAMSVFFYTFREREELLDIFEILCGARLTTNYYRVG 190
Query: 690 GVSLDMP 710
GV DMP
Sbjct: 191 GVESDMP 197
>UniRef50_Q1AVI6 Cluster: NADH dehydrogenase; n=1; Rubrobacter
xylanophilus DSM 9941|Rep: NADH dehydrogenase -
Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 358
Score = 105 bits (252), Expect = 1e-21
Identities = 48/89 (53%), Positives = 62/89 (69%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHPA HG+LRL+LELDGET+ DP +G LHR EK+ E +TY +P DRLDY + M
Sbjct: 5 PQHPAMHGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRTYPAVIPLTDRLDYFANM 64
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
NE Y LAVE LL +++P RA+Y + +
Sbjct: 65 HNEHGYCLAVEDLLGVEIPPRAEYIRVLM 93
Score = 69.7 bits (163), Expect = 7e-11
Identities = 30/67 (44%), Positives = 44/67 (65%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R L E+ R+ +H+ ++G L++GA TP + F ERE++ F+E V+GARM YIR G
Sbjct: 90 RVLMCELMRIASHLPSIGFLLLELGAFTPILYAFRERERIQNFFEAVTGARMMFHYIRIG 149
Query: 690 GVSLDMP 710
GV D+P
Sbjct: 150 GVKADLP 156
>UniRef50_Q2S5J0 Cluster: NADH dehydrogenase I, D subunit; n=4;
Bacteria|Rep: NADH dehydrogenase I, D subunit -
Salinibacter ruber (strain DSM 13855)
Length = 451
Score = 104 bits (250), Expect = 2e-21
Identities = 47/89 (52%), Positives = 64/89 (71%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHPA HGVLR V+++DGET+ + IG LHRG EKL E+KTY + +PY DR+DY+S
Sbjct: 73 PQHPATHGVLRCVVKMDGETIEKSVLDIGYLHRGIEKLAEHKTYQEFMPYTDRMDYLSPY 132
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
N + LAVEKL +I+VP RA++ + +
Sbjct: 133 SNNVAWCLAVEKLADIEVPERAQWIRMIM 161
Score = 56.0 bits (129), Expect = 9e-07
Identities = 23/65 (35%), Positives = 41/65 (63%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + +E+ R+ +H + +G +D GA++ F W F+ERE++ + V+GAR ++ R G
Sbjct: 158 RMIMSELARISSHCLWLGVGMMDAGAVSGFVWTFQEREEIYSIMDEVAGARFTVSHSRIG 217
Query: 690 GVSLD 704
GV+ D
Sbjct: 218 GVAND 222
>UniRef50_Q67KN9 Cluster: NADH dehydrogenase I subunit D; n=19;
Firmicutes|Rep: NADH dehydrogenase I subunit D -
Symbiobacterium thermophilum
Length = 384
Score = 104 bits (249), Expect = 3e-21
Identities = 51/91 (56%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGVLRL+++LDGE V +P IG LHR EKL E KTY Q +P+ DR DY++ M
Sbjct: 15 PQHPSTHGVLRLMIKLDGEQVTWCEPDIGYLHRCFEKLAEQKTYPQVIPFTDRTDYLAAM 74
Query: 436 CNEQCYSLAVEKLLN--IDVPLRAKYTELCL 522
NE CY AVEKL I VP RA+Y + L
Sbjct: 75 LNELCYVEAVEKLFGDAIQVPERAQYIRVML 105
Score = 74.9 bits (176), Expect = 2e-12
Identities = 31/73 (42%), Positives = 51/73 (69%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q R + AE+ R+ +H++A+G+ A+D+GA TPF + + +REK+ +ER++G RM Y+
Sbjct: 99 QYIRVMLAELQRITSHLLALGSMAMDLGATTPFLYCWRDREKLYSLFERITGGRMLYNYL 158
Query: 681 RPGGVSLDMPLGL 719
R GGV D+P G+
Sbjct: 159 RIGGVRNDLPEGI 171
>UniRef50_A7CUG2 Cluster: NADH dehydrogenase I, D subunit; n=1;
Opitutaceae bacterium TAV2|Rep: NADH dehydrogenase I, D
subunit - Opitutaceae bacterium TAV2
Length = 419
Score = 103 bits (247), Expect = 4e-21
Identities = 46/83 (55%), Positives = 58/83 (69%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P HP+ HGVLRL LELDGE V DP IG LHRG EK+ E TY Q +PY DRLDY++ +
Sbjct: 41 PSHPSTHGVLRLQLELDGEIVTKCDPVIGYLHRGDEKIAENMTYNQFVPYTDRLDYLAPL 100
Query: 436 CNEQCYSLAVEKLLNIDVPLRAK 504
N Y++AVE+L ++VP R +
Sbjct: 101 ANNVAYAIAVERLAGLEVPARCQ 123
Score = 67.7 bits (158), Expect = 3e-10
Identities = 28/72 (38%), Positives = 47/72 (65%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q R + AE+ R+ +H++ G+ A+D G+ T F + F EREK+ + +E ++GAR +Y
Sbjct: 123 QAIRVIVAELARISSHLLGFGSFAMDTGSWTAFMYQFNEREKLYKLFEELTGARFTTSYT 182
Query: 681 RPGGVSLDMPLG 716
R GG++ D+P G
Sbjct: 183 RIGGLARDVPEG 194
>UniRef50_A7H9V5 Cluster: NADH dehydrogenase; n=4;
Cystobacterineae|Rep: NADH dehydrogenase -
Anaeromyxobacter sp. Fw109-5
Length = 431
Score = 103 bits (246), Expect = 6e-21
Identities = 50/86 (58%), Positives = 59/86 (68%)
Frame = +1
Query: 250 LRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 429
L P HPA HGV R V+ELDGE +R+ IG LHRG EK E T+TQ PY DRL+YVS
Sbjct: 52 LGPSHPAMHGVTRAVVELDGEMIRSMKLDIGFLHRGFEKSCENVTWTQCFPYTDRLNYVS 111
Query: 430 MMCNEQCYSLAVEKLLNIDVPLRAKY 507
+ N ++LAVEKL +DVP RAKY
Sbjct: 112 SIMNNVGFALAVEKLCKLDVPERAKY 137
Score = 52.0 bits (119), Expect = 1e-05
Identities = 25/69 (36%), Positives = 42/69 (60%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + +EI R+ +H+ VG A+++GA+T F + E R+ + + + GAR+ + Y R G
Sbjct: 139 RVVTSEIHRICDHLTLVGAMAMELGAMTVFLYAIEARDIIYDRLAELCGARLTSNYGRIG 198
Query: 690 GVSLDMPLG 716
GV+ D P G
Sbjct: 199 GVARDTPDG 207
>UniRef50_Q190M8 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=2; Desulfitobacterium hafniense|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Desulfitobacterium hafniense (strain DCB-2)
Length = 370
Score = 102 bits (245), Expect = 8e-21
Identities = 45/89 (50%), Positives = 60/89 (67%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGV R+V+ L GETV +P IG LHRG EK+ E +TY Q +PY DRLDY++
Sbjct: 18 PQHPSMHGVFRMVVRLQGETVTGIEPKIGYLHRGLEKIAESRTYPQFIPYTDRLDYLASP 77
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
N Y VEKL+ +++P RA+Y + L
Sbjct: 78 HNNLAYVQTVEKLMGLEIPERAEYLRIIL 106
Score = 50.8 bits (116), Expect = 3e-05
Identities = 22/67 (32%), Positives = 42/67 (62%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + AE+ R +H + + + ALD+ T + + F +RE++++ +E +SG+R+ +R G
Sbjct: 103 RIILAELARFASHQVFIASAALDMAGWTAWGYPFRDRERILDLFEMMSGSRLTVNCMRIG 162
Query: 690 GVSLDMP 710
GVS + P
Sbjct: 163 GVSAEPP 169
>UniRef50_Q3ZXR8 Cluster: Proton-translocating NADH-quinone
oxidoreductase, D subunit; n=7; Bacteria|Rep:
Proton-translocating NADH-quinone oxidoreductase, D
subunit - Dehalococcoides sp. (strain CBDB1)
Length = 367
Score = 101 bits (243), Expect = 1e-20
Identities = 47/89 (52%), Positives = 58/89 (65%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGV RL + LDGE + +P G LHRG EKL E +TY Q +P+ DRLDY+ M
Sbjct: 14 PQHPSTHGVFRLRIVLDGEVITDLEPVFGYLHRGIEKLAEGRTYLQDIPFTDRLDYLGSM 73
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
N Y +AVEKL I VP RA+Y + L
Sbjct: 74 TNNHAYVMAVEKLAGITVPERAEYIRVIL 102
Score = 56.8 bits (131), Expect = 5e-07
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGAL-TPFFWLFEEREKMMEFYERVSGARMHAAYIRP 686
R + E+ R+ +H+ +G D+GAL TP ++F EREK++E ++ SG R++ Y R
Sbjct: 99 RVILDELQRIASHLAGLGFFLNDLGALQTPLLYMFREREKIVELFDMCSGQRLNYNYYRF 158
Query: 687 GGVSLDMP 710
GG D+P
Sbjct: 159 GGFVQDLP 166
>UniRef50_A5UXK3 Cluster: NADH dehydrogenase; n=3; Chloroflexi
(class)|Rep: NADH dehydrogenase - Roseiflexus sp. RS-1
Length = 374
Score = 99.5 bits (237), Expect = 7e-20
Identities = 44/89 (49%), Positives = 58/89 (65%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGV R+++ +DGET+ P G LHR E+L E TY Q++PY DRLDY + M
Sbjct: 13 PQHPSTHGVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAEVSTYIQSMPYTDRLDYFNSM 72
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
N +LAVEKL I VP RA+Y + +
Sbjct: 73 ANNHALALAVEKLAGISVPQRAEYIRVLM 101
Score = 63.7 bits (148), Expect = 4e-09
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGAL-TPFFWLFEEREKMMEFYERVSGARMHAAYIRP 686
R L E+TR+LNH AVG D+GA TP + EREK+++ +E SGARM Y R
Sbjct: 98 RVLMVELTRILNHASAVGFLLNDMGAWQTPLMFGMREREKILDLFEMASGARMMCNYFRF 157
Query: 687 GGVSLDMP 710
GGV D+P
Sbjct: 158 GGVWRDLP 165
>UniRef50_Q1IS59 Cluster: NADH dehydrogenase I, D subunit; n=2;
Acidobacteria|Rep: NADH dehydrogenase I, D subunit -
Acidobacteria bacterium (strain Ellin345)
Length = 381
Score = 98.7 bits (235), Expect = 1e-19
Identities = 45/89 (50%), Positives = 61/89 (68%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGVLR++L+LDGE V + IG LHRG EK+ E +TY Q PY DR+DYV+ +
Sbjct: 29 PQHPSTHGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRTYVQFNPYVDRMDYVAAV 88
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
N Y AVEKL+++ P RA++ + L
Sbjct: 89 SNGLGYCEAVEKLIDVQAPPRAQFLRVIL 117
Score = 67.3 bits (157), Expect = 4e-10
Identities = 28/64 (43%), Positives = 44/64 (68%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q R + E+ RL +H++ +GTHALD+GALTP F+ F +RE++++ +E+ GAR+
Sbjct: 111 QFLRVILTELNRLASHMVWLGTHALDIGALTPLFYTFRDREEVLKIFEKYCGARLTTHAF 170
Query: 681 RPGG 692
R GG
Sbjct: 171 RIGG 174
>UniRef50_P21301 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit homolog; n=3; Trypanosomatidae|Rep:
NADH-ubiquinone oxidoreductase 49 kDa subunit homolog -
Trypanosoma brucei brucei
Length = 386
Score = 98.7 bits (235), Expect = 1e-19
Identities = 49/89 (55%), Positives = 57/89 (64%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHPAAHGVL +L GE + D IG LHRGTEKL EYK+ Q LPYFDRLDYVS+
Sbjct: 17 PQHPAAHGVLCCLLYFCGEFIVYIDCIIGYLHRGTEKLCEYKSVEQCLPYFDRLDYVSVC 76
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
CNE SL E +L + LR + L +
Sbjct: 77 CNEHLLSLCFEYMLRCCLSLRCAFMRLLI 105
Score = 61.3 bits (142), Expect = 2e-08
Identities = 27/69 (39%), Positives = 39/69 (56%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R L E TR N ++ + LD+G L+P W FEER+K+M F++ G RMH A++
Sbjct: 102 RLLIVEFTRSFNGLLCISCMVLDLGCLSPLLWSFEERDKLMTFFDLCCGCRMHLAFMVLL 161
Query: 690 GVSLDMPLG 716
G+ D G
Sbjct: 162 GILDDFVFG 170
>UniRef50_Q6MDR3 Cluster: Putative NADH-ubiquinone oxidoreductase
chain C/D; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Putative NADH-ubiquinone oxidoreductase chain
C/D - Protochlamydia amoebophila (strain UWE25)
Length = 402
Score = 96.7 bits (230), Expect = 5e-19
Identities = 47/91 (51%), Positives = 60/91 (65%)
Frame = +1
Query: 250 LRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 429
L PQHP+ HGVLRL L L+GE V + DP IG LH G EK E +TY Q DRLDY+S
Sbjct: 23 LGPQHPSTHGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRTYHQVFTLVDRLDYLS 82
Query: 430 MMCNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
EQ ++ A+E+L+NI+VP RA+ + L
Sbjct: 83 GPAEEQAFAGALERLMNIEVPERAQTIRIIL 113
Score = 59.7 bits (138), Expect = 7e-08
Identities = 26/69 (37%), Positives = 46/69 (66%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q R + E++R+ +H++ GT AL++ + F + F EREK+++ +E+VSGARM +
Sbjct: 107 QTIRIILLELSRIASHLLWAGTSALELNMSSVFMYSFAEREKILDLFEQVSGARMFPSLW 166
Query: 681 RPGGVSLDM 707
R GG++ D+
Sbjct: 167 RIGGLAKDL 175
>UniRef50_Q9PM99 Cluster: NADH-quinone oxidoreductase subunit D;
n=24; Epsilonproteobacteria|Rep: NADH-quinone
oxidoreductase subunit D - Campylobacter jejuni
Length = 408
Score = 96.7 bits (230), Expect = 5e-19
Identities = 45/91 (49%), Positives = 58/91 (63%)
Frame = +1
Query: 250 LRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 429
L PQHP+AHG LRL+LELDGE V A P IG +HRG EK+ E Y + +P DR+DY++
Sbjct: 27 LGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIA 86
Query: 430 MMCNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
N Y AVEKL +++P RA + L
Sbjct: 87 ASANNYAYCAAVEKLCGLEIPRRAAVIRMIL 117
Score = 66.5 bits (155), Expect = 6e-10
Identities = 28/69 (40%), Positives = 47/69 (68%)
Frame = +3
Query: 504 VHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIR 683
V R + E+ R+ +H++ + THALD+GA++ F + F ERE +++ E+ GAR+ + +R
Sbjct: 112 VIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKYCGARLTHSSMR 171
Query: 684 PGGVSLDMP 710
GGV LD+P
Sbjct: 172 IGGVMLDLP 180
>UniRef50_A3ZL03 Cluster: NADH dehydrogenase; n=1; Blastopirellula
marina DSM 3645|Rep: NADH dehydrogenase -
Blastopirellula marina DSM 3645
Length = 418
Score = 94.7 bits (225), Expect = 2e-18
Identities = 45/89 (50%), Positives = 61/89 (68%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGVLRLVL DGE V A PHIG LHR EK+ E T Q +PY DR+DY++ M
Sbjct: 42 PQHPSTHGVLRLVLRTDGEVVSEATPHIGYLHRCAEKIGENLTPRQWIPYTDRMDYLAGM 101
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
++LAVEKL++ D+P +A++ + +
Sbjct: 102 NMNLGWALAVEKLIDYDLPEKARHLRVII 130
Score = 72.9 bits (171), Expect = 7e-12
Identities = 27/69 (39%), Positives = 48/69 (69%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + AE+ R+ +H++ +GT+ LD+G+ +PF + F ERE++++ E GAR+ +Y+ PG
Sbjct: 127 RVIIAELNRIASHLVGMGTYGLDLGSFSPFLYAFRERERILDLLEDACGARLTYSYLTPG 186
Query: 690 GVSLDMPLG 716
G + D+P G
Sbjct: 187 GATADLPPG 195
>UniRef50_Q67P19 Cluster: NADH dehydrogenase I subunit D; n=1;
Symbiobacterium thermophilum|Rep: NADH dehydrogenase I
subunit D - Symbiobacterium thermophilum
Length = 404
Score = 93.9 bits (223), Expect = 4e-18
Identities = 46/91 (50%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P HPA HGVLR+ LEL+GETV A+P G LH G EK E+ T+ QA DR+DY+S +
Sbjct: 23 PHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAEHLTWNQATTVMDRMDYLSPI 82
Query: 436 CNEQCYSLAVEKLLNID--VPLRAKYTELCL 522
N Y +AVEKLL I+ +P +A+ T + L
Sbjct: 83 SNNTGYVMAVEKLLGIEDRIPEKARVTRVIL 113
Score = 71.3 bits (167), Expect = 2e-11
Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +3
Query: 477 EHRCSSAGQVHRTLFAEITRLLNHIMAVGTHALDVGAL-TPFFWLFEEREKMMEFYERVS 653
E R +V R + E+ R+ +H++ +GT LD G + TP FW FE R+++++ +E +
Sbjct: 99 EDRIPEKARVTRVILLELNRVASHLVGLGTGGLDYGNIGTPIFWAFELRDRILDIFEHTT 158
Query: 654 GARMHAAYIRPGGVSLDMP 710
G RM+ +Y+R GG++ D+P
Sbjct: 159 GQRMNPSYMRVGGLAYDLP 177
>UniRef50_Q56220 Cluster: NADH-quinone oxidoreductase subunit 4;
n=10; Bacteria|Rep: NADH-quinone oxidoreductase subunit
4 - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM
579)
Length = 409
Score = 93.5 bits (222), Expect = 5e-18
Identities = 44/89 (49%), Positives = 58/89 (65%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGVLRL++ L GE V PHIG LH G EK +E++TY Q + Y R+DY+
Sbjct: 32 PQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSF 91
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
++ Y+LAVEKLL VP RA+ + L
Sbjct: 92 AHDLAYALAVEKLLGAVVPPRAETIRVIL 120
Score = 76.6 bits (180), Expect = 6e-13
Identities = 33/67 (49%), Positives = 48/67 (71%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + E++RL +H++ +GT LD+GALTPFF+ F ERE +++ +E V+G R H YIR G
Sbjct: 117 RVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIG 176
Query: 690 GVSLDMP 710
GV D+P
Sbjct: 177 GVKEDLP 183
>UniRef50_Q5DUX5 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=3; Nyctotherus ovalis|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Nyctotherus ovalis
Length = 412
Score = 93.5 bits (222), Expect = 5e-18
Identities = 45/92 (48%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Frame = +1
Query: 211 KTGRKESTQHDP---ELRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK 381
+ G K+ST+ PQHPA+HGVLRLV+ + GE V DPHIG LHRGTE+L+E
Sbjct: 15 RVGSKDSTRFRILILNFGPQHPASHGVLRLVIVIIGEVVTKLDPHIGFLHRGTERLVEEH 74
Query: 382 TYTQALPYFDRLDYVSMMCNEQCYSLAVEKLL 477
+Y A + DRLDY +++ Y LAVE+ L
Sbjct: 75 SYMNAAVFMDRLDYTTVLTQTHAYCLAVEQAL 106
Score = 85.4 bits (202), Expect = 1e-15
Identities = 35/71 (49%), Positives = 51/71 (71%)
Frame = +3
Query: 474 AEHRCSSAGQVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVS 653
A+ R Q+ RT+F E++R+LNH++++ THALD+G + FW FE+RE++ME YE +S
Sbjct: 107 AKSRLCIRTQLLRTIFDELSRILNHLLSIATHALDIGTMAMLFWAFEDRERIMELYEYIS 166
Query: 654 GARMHAAYIRP 686
GARMH A P
Sbjct: 167 GARMHTALYYP 177
>UniRef50_Q979M3 Cluster: NADH dehydrogenase I chain D; n=6;
Thermoplasmatales|Rep: NADH dehydrogenase I chain D -
Thermoplasma volcanium
Length = 369
Score = 93.1 bits (221), Expect = 6e-18
Identities = 44/89 (49%), Positives = 60/89 (67%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGVLRL ++LDGE V+ +P IG LHR EK+ E + Y + YFDR+DYV+ M
Sbjct: 13 PQHPSMHGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYFDRMDYVAAM 72
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
E Y A EKLL+++ P RAK+ + +
Sbjct: 73 NMEIGYLEAAEKLLDVEPPGRAKWIRVMM 101
Score = 65.7 bits (153), Expect = 1e-09
Identities = 27/66 (40%), Positives = 44/66 (66%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + E+ R+ +H++ +G LD+G LTPFF+ F+EREK+++ + VSG+R Y+ G
Sbjct: 98 RVMMGELNRIASHLVWLGAFGLDLGMLTPFFYCFKEREKILKIFTEVSGSRQQLNYMSIG 157
Query: 690 GVSLDM 707
GV D+
Sbjct: 158 GVYQDV 163
>UniRef50_A7H9U8 Cluster: NADH dehydrogenase; n=2;
Anaeromyxobacter|Rep: NADH dehydrogenase -
Anaeromyxobacter sp. Fw109-5
Length = 381
Score = 91.9 bits (218), Expect = 1e-17
Identities = 39/84 (46%), Positives = 58/84 (69%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGV+ ++E DGE ++ A P +G LHR EK+ E Y +P+ DR+DYV+ M
Sbjct: 22 PQHPSTHGVINFIVETDGEVMKRAIPDVGYLHRSIEKIGEVTGYPGFMPFTDRIDYVAAM 81
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
+ Y++AVEKLL ++VP RA++
Sbjct: 82 FANEGYAIAVEKLLKVEVPPRAQW 105
Score = 63.7 bits (148), Expect = 4e-09
Identities = 28/69 (40%), Positives = 44/69 (63%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + E+ R+ +H++AVGT +D+GA TP ERE++ ++ E + GAR+ Y R G
Sbjct: 107 RAISGELVRIASHLIAVGTMTMDIGAFTPMVHGLREREEINDYIEALCGARLTYNYHRIG 166
Query: 690 GVSLDMPLG 716
GV+ D+P G
Sbjct: 167 GVAFDLPEG 175
>UniRef50_A4XCQ7 Cluster: NADH dehydrogenase; n=5;
Actinomycetales|Rep: NADH dehydrogenase - Salinispora
tropica CNB-440
Length = 388
Score = 91.5 bits (217), Expect = 2e-17
Identities = 46/102 (45%), Positives = 63/102 (61%)
Frame = +1
Query: 217 GRKESTQHDPELRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQA 396
G + T + PQHP+ HGVLRL L LDGE V +A+P +G +HRG EKL E + Y Q
Sbjct: 21 GEQLGTDMVLNIGPQHPSTHGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVRDYRQI 80
Query: 397 LPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
+ +R D++S NE LAVE+LL ++VP RA + + L
Sbjct: 81 IVLANRHDWLSAFANELGVVLAVERLLGMEVPERATWLRMAL 122
Score = 71.7 bits (168), Expect = 2e-11
Identities = 30/69 (43%), Positives = 46/69 (66%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R AE+ R+LNH+M +G++ L++GA+TP F+ F ERE + E VSG R+H + R G
Sbjct: 119 RMALAELNRVLNHLMFLGSYPLEIGAITPMFYAFRERETLQTALEEVSGGRIHYMFNRVG 178
Query: 690 GVSLDMPLG 716
G+ ++P G
Sbjct: 179 GLKEEVPAG 187
>UniRef50_Q8KEC0 Cluster: NADH dehydrogenase I, 49 kDa subunit;
n=12; Bacteroidetes/Chlorobi group|Rep: NADH
dehydrogenase I, 49 kDa subunit - Chlorobium tepidum
Length = 368
Score = 90.6 bits (215), Expect = 3e-17
Identities = 42/84 (50%), Positives = 56/84 (66%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGVLRL DGE V A+P++G LHR EK E Y +PY DR+DY++ M
Sbjct: 7 PQHPSTHGVLRLECITDGEVVVEAEPYLGYLHRCFEKHCEKIDYPAIVPYTDRMDYLAGM 66
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
NE Y + VEKLL+I++P R ++
Sbjct: 67 NNELAYCITVEKLLDIEIPRRVEF 90
Score = 73.3 bits (172), Expect = 5e-12
Identities = 31/67 (46%), Positives = 48/67 (71%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + AE+ R+ +H++A+GT+A+D+GA TPF + F +RE +M E +SGARM YI G
Sbjct: 92 RVIVAELNRIASHLVAIGTYAIDLGAFTPFLFCFRDREHIMSLLEWISGARMLYNYIWIG 151
Query: 690 GVSLDMP 710
G++ D+P
Sbjct: 152 GLAYDVP 158
>UniRef50_P65570 Cluster: NADH-quinone oxidoreductase subunit D;
n=41; Bacteria|Rep: NADH-quinone oxidoreductase subunit
D - Mycobacterium bovis
Length = 440
Score = 90.6 bits (215), Expect = 3e-17
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGVLRL+LE++GETV A IG LH G EK +EY+ +TQ + + R+DY+S
Sbjct: 45 PQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRMDYLSPF 104
Query: 436 CNEQCYSLAVEKLLNI--DVPLR 498
NE Y L VEKLL I ++P R
Sbjct: 105 FNETAYCLGVEKLLGITDEIPER 127
Score = 72.9 bits (171), Expect = 7e-12
Identities = 30/69 (43%), Positives = 50/69 (72%)
Frame = +3
Query: 504 VHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIR 683
V R L E+ R+ +H++A+ T +++GA+TP F F RE ++ +E+++G RM++AYIR
Sbjct: 130 VIRVLMMELNRISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIR 189
Query: 684 PGGVSLDMP 710
PGGV+ D+P
Sbjct: 190 PGGVAQDLP 198
>UniRef50_Q9P9G0 Cluster: F420H2 dehydrogenase subunit FpoD; n=6;
Archaea|Rep: F420H2 dehydrogenase subunit FpoD -
Methanosarcina mazei (Methanosarcina frisia)
Length = 374
Score = 90.2 bits (214), Expect = 4e-17
Identities = 43/99 (43%), Positives = 62/99 (62%)
Frame = +1
Query: 226 ESTQHDPELRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 405
ES + L PQHP G RL L+L GET+ A+ +G +H+G EK++E +TY Q +
Sbjct: 6 ESNEMIVHLGPQHPMQPGPFRLNLKLKGETIMDAEVEMGYIHKGIEKILENRTYLQGITI 65
Query: 406 FDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
DR+ Y+ + NE+CY VEKLL+I+ P RA+Y + L
Sbjct: 66 VDRICYLVALTNEECYVGCVEKLLDIEPPERAQYIRVIL 104
Score = 54.4 bits (125), Expect = 3e-06
Identities = 24/72 (33%), Positives = 45/72 (62%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q R + E++RL +H++ +G + +G ++ F + +ERE ++ + V+GAR+ +Y+
Sbjct: 98 QYIRVILEELSRLQSHLLGLGEYGEFIGFVSMFMYTIKEREDILTLIDMVTGARVTHSYL 157
Query: 681 RPGGVSLDMPLG 716
R GGV D+P G
Sbjct: 158 RFGGVRDDLPEG 169
>UniRef50_A2Q588 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; Respiratory-chain NADH dehydrogenase, subunit 1;
n=2; core eudicotyledons|Rep: NADH-ubiquinone
oxidoreductase, chain 49kDa; Respiratory-chain NADH
dehydrogenase, subunit 1 - Medicago truncatula (Barrel
medic)
Length = 288
Score = 86.2 bits (204), Expect = 7e-16
Identities = 42/87 (48%), Positives = 54/87 (62%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGVLRL++ LDGE V +P +G LHRG EK+ E +T Q LPY R DY++ M
Sbjct: 17 PQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATM 76
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTEL 516
E E+L NI VP R K ++
Sbjct: 77 FTEAITVNGPEQLGNIQVPKRMKLADI 103
>UniRef50_A1ALP2 Cluster: NADH dehydrogenase; n=1; Pelobacter
propionicus DSM 2379|Rep: NADH dehydrogenase -
Pelobacter propionicus (strain DSM 2379)
Length = 403
Score = 85.8 bits (203), Expect = 9e-16
Identities = 41/89 (46%), Positives = 53/89 (59%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P HPA HG ++++ LDGE V AD H G LHRG EK E+ TY + +P+ DRL+Y S +
Sbjct: 26 PSHPATHGTIQIIAALDGERVAKADIHCGYLHRGFEKESEHHTYHKIIPFTDRLNYCSAL 85
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
N Y VEKLL I++ R Y L
Sbjct: 86 NNNFAYVEGVEKLLGIELTPRCIYLRTLL 114
Score = 55.2 bits (127), Expect = 2e-06
Identities = 24/69 (34%), Positives = 42/69 (60%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RTL AE R+ +H+ V +++GA+T F +L R+ + E +++GAR+ ++ R G
Sbjct: 111 RTLLAEYNRVADHVTCVAATVMEMGAMTAFLYLMTIRDYIFEHLNQLTGARLTYSFARVG 170
Query: 690 GVSLDMPLG 716
G+ D+P G
Sbjct: 171 GLKNDLPDG 179
>UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D;
n=95; cellular organisms|Rep: NADH-quinone
oxidoreductase subunit C/D - Salmonella typhimurium
Length = 600
Score = 85.8 bits (203), Expect = 9e-16
Identities = 41/91 (45%), Positives = 55/91 (60%)
Frame = +1
Query: 250 LRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 429
L P HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY DR++Y+
Sbjct: 220 LGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLG 279
Query: 430 MMCNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
NE Y LAVEKL I VP R + L
Sbjct: 280 GCVNEMPYVLAVEKLAGITVPDRVNVIRVML 310
Score = 69.3 bits (162), Expect = 9e-11
Identities = 29/71 (40%), Positives = 48/71 (67%)
Frame = +3
Query: 504 VHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIR 683
V R + +E+ R+ +H++ + T DVGA+TP F+ F +R+K+ + E ++G RMH A+ R
Sbjct: 305 VIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFR 364
Query: 684 PGGVSLDMPLG 716
GGV+ D+P G
Sbjct: 365 IGGVAHDLPRG 375
>UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aquifex
aeolicus|Rep: NADH dehydrogenase I chain D - Aquifex
aeolicus
Length = 593
Score = 85.4 bits (202), Expect = 1e-15
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P HP HG + + +L+GE + D +G LHRG EKL E++ Y Q L Y DR+DY+S +
Sbjct: 225 PLHPGTHGTMWFLFDLEGERIVQTDVILGQLHRGVEKLAEHEMYNQFLVYTDRMDYLSAL 284
Query: 436 CNEQCYSLAVEKLLNI--DVPLRAKY 507
C+ Q + +A+E+L+ I VP +AKY
Sbjct: 285 CSNQAWVVAIERLMGIHDKVPPKAKY 310
Score = 77.4 bits (182), Expect = 3e-13
Identities = 33/69 (47%), Positives = 53/69 (76%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RT+ +E+ R+ +H++ +GT+ALD+GALT F + F+EREK+M+ E ++GAR+ +Y R G
Sbjct: 312 RTMMSELQRINSHLLWLGTYALDLGALTIFLYAFKEREKIMDIIEGITGARLTISYPRIG 371
Query: 690 GVSLDMPLG 716
GV +D+P G
Sbjct: 372 GVRMDLPEG 380
>UniRef50_P56753 Cluster: NAD(P)H-quinone oxidoreductase chain H,
chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain
H); n=129; cellular organisms|Rep: NAD(P)H-quinone
oxidoreductase chain H, chloroplast (EC 1.6.5.-)
(NAD(P)H dehydrogenase, chain H) - Arabidopsis thaliana
(Mouse-ear cress)
Length = 393
Score = 84.2 bits (199), Expect = 3e-15
Identities = 41/89 (46%), Positives = 53/89 (59%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P HP+ HGVLRL++ LDGE V +P +G LHRG EK+ E + Q LPY R DY++ M
Sbjct: 17 PHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVTRWDYLATM 76
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
E E+L NI VP RA Y + +
Sbjct: 77 FTEAITVNGPEQLGNIQVPKRASYIRVIM 105
Score = 66.9 bits (156), Expect = 5e-10
Identities = 28/91 (30%), Positives = 51/91 (56%)
Frame = +3
Query: 444 AVLQSGRREAAEHRCSSAGQVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEERE 623
A+ +G + + R + E++R+ +H++ +G D+GA TPFF++F ERE
Sbjct: 80 AITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERE 139
Query: 624 KMMEFYERVSGARMHAAYIRPGGVSLDMPLG 716
+ + +E +G RM + R GG++ D+P G
Sbjct: 140 FVYDLFEAATGMRMMHNFFRIGGIAADLPYG 170
>UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8;
Bacteroidetes|Rep: NADH dehydrogenase I, chain D -
Bacteroides thetaiotaomicron
Length = 538
Score = 83.4 bits (197), Expect = 5e-15
Identities = 38/84 (45%), Positives = 50/84 (59%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHPA HGV+R + L+GE +R D + G +HRG EK+ E TY Q L DRLDY+
Sbjct: 186 PQHPATHGVMRFRVSLEGEIIRKIDANCGYIHRGIEKMNESLTYPQTLALTDRLDYLGAH 245
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
N + +EK + I+V R KY
Sbjct: 246 QNRHALCMCIEKAMGIEVSDRVKY 269
Score = 57.2 bits (132), Expect = 4e-07
Identities = 25/66 (37%), Positives = 41/66 (62%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RT+ E+ R+ +H++ A+D+GALT FF+ F +REK+++ +E G R+ Y G
Sbjct: 271 RTIMDELQRIDSHLLFYSALAMDLGALTAFFYGFRDREKILDIFEETCGGRLIMNYNTIG 330
Query: 690 GVSLDM 707
GV D+
Sbjct: 331 GVQADL 336
>UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits;
n=32; Proteobacteria|Rep: NADH dehydrogenase I, B/C/D
subunits - Geobacter sulfurreducens
Length = 792
Score = 83.0 bits (196), Expect = 7e-15
Identities = 39/83 (46%), Positives = 53/83 (63%)
Frame = +1
Query: 250 LRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 429
L PQHP HG++R VL+LDGE + D IG HRG EK+ E + + Q +PY DR+DY++
Sbjct: 413 LGPQHPGTHGIIRFVLKLDGEEIVDMDTDIGYHHRGAEKIGERQHWNQFIPYTDRIDYLA 472
Query: 430 MMCNEQCYSLAVEKLLNIDVPLR 498
+ N Y +VE+L I VP R
Sbjct: 473 GVQNNLAYVNSVERLCGITVPDR 495
Score = 77.4 bits (182), Expect = 3e-13
Identities = 33/69 (47%), Positives = 49/69 (71%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + AE+ R+ NH++ +GT A DVGA+TP F+ F +REK+ + E V+G RMH ++ R G
Sbjct: 500 RVMLAELFRIANHLVWLGTFAADVGAMTPVFYTFTDREKIFDIVEMVTGGRMHPSWFRIG 559
Query: 690 GVSLDMPLG 716
GV+ D+P G
Sbjct: 560 GVADDLPEG 568
>UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1;
Bdellovibrio bacteriovorus|Rep: NADH dehydrogenase I,D
subunit - Bdellovibrio bacteriovorus
Length = 560
Score = 83.0 bits (196), Expect = 7e-15
Identities = 39/89 (43%), Positives = 54/89 (60%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P H A HG LR++ E+DGET+ + IG LHR EK+ E Y Q +PY DRL+Y S
Sbjct: 183 PSHTAMHGTLRVMAEMDGETIVRCNNEIGYLHRCFEKMAETHPYNQVIPYTDRLNYCSAP 242
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
N Y AVE+LL +++P +A+ + L
Sbjct: 243 MNNIGYCKAVERLLGVEIPPKAQAMRVIL 271
Score = 72.9 bits (171), Expect = 7e-12
Identities = 31/72 (43%), Positives = 51/72 (70%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q R + AE++R+++H +A+GT A+D+GALT FF++F REK+ +E++ GAR+ +
Sbjct: 265 QAMRVILAELSRIIDHTIAIGTGAMDLGALTSFFYMFGMREKVYGLFEKLCGARLTVSMT 324
Query: 681 RPGGVSLDMPLG 716
R GG++ D P G
Sbjct: 325 RIGGMAQDAPEG 336
>UniRef50_Q8F7Q2 Cluster: NADH dehydrogenase I, D subunit; n=8;
Bacteria|Rep: NADH dehydrogenase I, D subunit -
Leptospira interrogans
Length = 405
Score = 82.2 bits (194), Expect = 1e-14
Identities = 41/91 (45%), Positives = 57/91 (62%)
Frame = +1
Query: 250 LRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 429
L P HPA HG+L+ V+++DGE + A+ IG +HR EKL E TY Q L DR++YVS
Sbjct: 26 LGPSHPATHGILQNVIQIDGERIVEAESVIGYVHRCFEKLGERYTYNQFLVCTDRMNYVS 85
Query: 430 MMCNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
N + LAVEK++ I+VP R Y + +
Sbjct: 86 TPLNNIGWILAVEKMMQIEVPDRVTYVRMII 116
Score = 53.2 bits (122), Expect = 6e-06
Identities = 21/66 (31%), Positives = 41/66 (62%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + +E++R+++HI+ G +D+GA + LF RE + + E+++GAR+ + R G
Sbjct: 113 RMIISELSRIIDHIICTGILGVDLGAFSGMLHLFHHRENIYQIIEKLTGARLTTTFCRIG 172
Query: 690 GVSLDM 707
G+ D+
Sbjct: 173 GLEKDI 178
>UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
NADH-quinone oxidoreductase chain c/d - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 561
Score = 82.2 bits (194), Expect = 1e-14
Identities = 39/89 (43%), Positives = 53/89 (59%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P HPA HG +R + LDGE + + IG LHRG EK E +Y Q +PY DRL+Y S M
Sbjct: 184 PSHPATHGTIRNFVALDGEKIISCVTEIGYLHRGFEKACENHSYAQIIPYTDRLNYCSAM 243
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
N Y+ AVE+ L +++P R + + L
Sbjct: 244 LNNVGYAKAVEEALGLNLPDRGIFMRVIL 272
Score = 52.4 bits (120), Expect = 1e-05
Identities = 20/65 (30%), Positives = 42/65 (64%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + E+ R+++H + +G +D+G LT +++L+ RE++ F +++GAR ++ R G
Sbjct: 269 RVILGELARIIDHEVCLGAMFVDMGGLTNYWYLYNPRERIYNFLSKLTGARFTNSFARIG 328
Query: 690 GVSLD 704
G++ D
Sbjct: 329 GMAND 333
>UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n=2;
Vibrionaceae|Rep: NADH dehydrogenase I, B/C/D subunits -
Photobacterium sp. SKA34
Length = 565
Score = 78.6 bits (185), Expect = 1e-13
Identities = 37/102 (36%), Positives = 56/102 (54%)
Frame = +1
Query: 217 GRKESTQHDPELRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQA 396
G+++ + P HP GV+RL +++ GE + D IG HRG EK+ E T+
Sbjct: 174 GKQDDGSMVLNIGPNHPGTDGVIRLKVKMKGEFIEDLDQEIGFHHRGAEKIAERHTFHNY 233
Query: 397 LPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
+PY DR+DY+ + E Y L +E + I+VP RAK + L
Sbjct: 234 IPYTDRIDYLGGVAGELPYLLGLEAMTGIEVPERAKTMRIML 275
Score = 62.5 bits (145), Expect = 1e-08
Identities = 27/69 (39%), Positives = 43/69 (62%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + E+ R+ +H++ G+ ++G + P F+ F EREK+ + E + G RMH A+ R G
Sbjct: 272 RIMLCELFRISSHLVWFGSITHNLGGMAPAFYAFTEREKIFDVIELICGGRMHPAFFRIG 331
Query: 690 GVSLDMPLG 716
GVS D+P G
Sbjct: 332 GVSQDLPDG 340
>UniRef50_Q1K3R4 Cluster: NADH dehydrogenase; n=4;
Deltaproteobacteria|Rep: NADH dehydrogenase -
Desulfuromonas acetoxidans DSM 684
Length = 374
Score = 76.6 bits (180), Expect = 6e-13
Identities = 36/84 (42%), Positives = 51/84 (60%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP+ HGVLR++LE++GE V P +G HR EK+ E+K +P R+DY+ +
Sbjct: 21 PQHPSTHGVLRVLLEMEGEYVIEPQPVLGYGHRCHEKIAEFKPAKSFMPNTARMDYLGAL 80
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
Y+L +EK I+VP RA Y
Sbjct: 81 IYNHGYALLLEKATGIEVPRRADY 104
Score = 60.9 bits (141), Expect = 3e-08
Identities = 24/66 (36%), Positives = 44/66 (66%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + +E+ R+ +H++ G + LD+GA TP + F++RE++++ E V+G+R+ Y R G
Sbjct: 106 RVITSELNRIQSHLLWFGAYLLDLGAFTPIMYAFDDREEILDILEDVTGSRLTYCYFRVG 165
Query: 690 GVSLDM 707
GV D+
Sbjct: 166 GVCKDI 171
>UniRef50_Q9YC29 Cluster: NuoD homolog; n=4; Thermoprotei|Rep: NuoD
homolog - Aeropyrum pernix
Length = 414
Score = 73.3 bits (172), Expect = 5e-12
Identities = 40/91 (43%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP + G +R+ + +DG+ + ADP IG +HR EKL E + + + +P F+R+ +
Sbjct: 36 PQHPGS-GHMRITIRVDGDIIVEADPDIGYVHRTMEKLGEIRGWIKPIPLFERMA-IHDA 93
Query: 436 CNEQC-YSLAVEKLLNIDVPLRAKY--TELC 519
CN Y LAVEKL+ ++ PLRAKY T LC
Sbjct: 94 CNITLPYVLAVEKLMGVEPPLRAKYLRTLLC 124
Score = 48.4 bits (110), Expect = 2e-04
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RTL EI R+ H+ + +G T + W +RE +E E ++GAR+ +Y PG
Sbjct: 120 RTLLCEINRIGAHLYGFAIFGVFLGHSTMYMWAMGDREVFIELAEALTGARLTHSYPIPG 179
Query: 690 GVSLDMP 710
G D+P
Sbjct: 180 GARRDIP 186
>UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;
Halobacteriaceae|Rep: NADH dehydrogenase/oxidoreductase
- Halobacterium salinarium (Halobacterium halobium)
Length = 562
Score = 72.1 bits (169), Expect = 1e-11
Identities = 45/111 (40%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Frame = +1
Query: 208 HKTGRKESTQHDPELRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTY 387
H+ +S + P HPA HGVL + LDGE V +P IG LHR E++ + TY
Sbjct: 181 HEQAADDSDTMFLNIGPHHPATHGVLHVETVLDGEQVADVNPDIGYLHRCEEQMAQKGTY 240
Query: 388 T-QALPYFDRLDY-VSMMCNEQCYSLAVEKLLNIDVP-----LRAKYTELC 519
Q +PY DR DY + NE Y+ E L +IDVP LR ELC
Sbjct: 241 RHQIMPYPDRWDYGPGGILNEWAYARTAEDLADIDVPEYAQILRTMGGELC 291
Score = 51.2 bits (117), Expect = 2e-05
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDV-GALTPFF-WLFEEREKMMEFYERVSGARMHAA 674
Q+ RT+ E+ R+ H++A+GT LD+ G T F + +RE + E ++G RM
Sbjct: 281 QILRTMGGELCRIACHMLALGTFCLDIYGDFTAIFMYAMRDREVVQNILEDLTGQRMMLN 340
Query: 675 YIRPGGVSLDMP 710
Y+R GGV D+P
Sbjct: 341 YLRLGGVVWDIP 352
>UniRef50_A0L9R4 Cluster: NADH dehydrogenase; n=2; Bacteria|Rep:
NADH dehydrogenase - Magnetococcus sp. (strain MC-1)
Length = 391
Score = 71.3 bits (167), Expect = 2e-11
Identities = 35/84 (41%), Positives = 49/84 (58%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP G + + L L G+ + A H+G LHRG EKL+E +T+ Q P R+
Sbjct: 35 PQHPGITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRTFIQCFPIVCRVCVPEPD 94
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
NE CY+ AVE+L I+ P RA++
Sbjct: 95 FNEYCYAAAVEELAGIECPERARW 118
Score = 43.6 bits (98), Expect = 0.005
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +3
Query: 468 EAAEHRCSSAGQVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYER 647
E A C + RTL E+ R+ +++M +G + G W R+ M++ +E
Sbjct: 106 ELAGIECPERARWIRTLILEMGRINSYLMYLGGQSGAFGMGVIGQWTTYIRDLMLDRFEE 165
Query: 648 VSGARMHAAYIRPGGVSLDMPLG 716
++GAR++ +I PGGV +P G
Sbjct: 166 LTGARIYHMFILPGGVRDGLPEG 188
>UniRef50_A0RY68 Cluster: NADH-ubiquinone oxidoreductase, subunit D;
n=2; Thermoprotei|Rep: NADH-ubiquinone oxidoreductase,
subunit D - Cenarchaeum symbiosum
Length = 379
Score = 70.9 bits (166), Expect = 3e-11
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP + G +RLV+++DG+ + + DP G +HRG EK+ EY+ + +P+ +R +
Sbjct: 25 PQHPGS-GHMRLVVKIDGDYIVSCDPDPGYVHRGEEKMAEYRNFVLNIPHLER-PVIHDS 82
Query: 436 CN-EQCYSLAVEKLLNIDVPLRAKYTEL 516
CN Y LA E ++ ++VP RAKY +
Sbjct: 83 CNILYPYCLAAEDIIGVEVPERAKYVRV 110
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + +E+ + + + + + +G T F W +RE +++ E+++GAR+ AY PG
Sbjct: 109 RVIASELNKCIYIQYWLAIYGIFLGHSTMFMWPAGDRELLIDLMEKLTGARVTHAYFVPG 168
Query: 690 GVSLDMP 710
GV D+P
Sbjct: 169 GVRNDLP 175
>UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase,
chain 49kDa; n=1; Ignicoccus hospitalis KIN4/I|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa - Ignicoccus
hospitalis KIN4/I
Length = 540
Score = 68.5 bits (160), Expect = 2e-10
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHPA HG + +L L GE V P +G +HRG E + E K Y + +P DR Y+ +
Sbjct: 177 PQHPATHGPVGFLLGLKGEIVEDVIPRLGYVHRGVEWIYEQKEYLKVIPLLDRQCYIDGI 236
Query: 436 CNEQCYSLAVEKLLNIDVPLRAK 504
E Y +A+E+++++ V RA+
Sbjct: 237 GWEWPYVMALEEIMDVKVDRRAQ 259
Score = 66.1 bits (154), Expect = 8e-10
Identities = 30/83 (36%), Positives = 49/83 (59%)
Frame = +3
Query: 468 EAAEHRCSSAGQVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYER 647
E + + Q+ R L AE++R+ +H++ +G+ A +V LT F W +RE + E
Sbjct: 248 EIMDVKVDRRAQLLRILAAELSRIQSHLLYIGSFAENVNHLTAFAWTVRDREVFINLLEM 307
Query: 648 VSGARMHAAYIRPGGVSLDMPLG 716
++G RM Y+RPGGV+ D+P G
Sbjct: 308 LTGQRMTFNYLRPGGVAFDLPQG 330
>UniRef50_Q9X0U3 Cluster: NADH dehydrogenase, 49 kDa subunit,
putative; n=4; Thermotogaceae|Rep: NADH dehydrogenase,
49 kDa subunit, putative - Thermotoga maritima
Length = 368
Score = 66.5 bits (155), Expect = 6e-10
Identities = 30/87 (34%), Positives = 50/87 (57%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P HP HG + + ++G+ V+ A P G LHRG EKL+E + + + R+
Sbjct: 10 PNHPGMHGNFSVHMYVEGDIVKKARPVPGFLHRGFEKLMERRYWYSNISLIPRICVPEPD 69
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTEL 516
NE CY++A+EK+ ++VP RA++ +
Sbjct: 70 INEICYAMAIEKIAKVEVPERAQWIRM 96
Score = 53.2 bits (122), Expect = 6e-06
Identities = 24/66 (36%), Positives = 39/66 (59%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + E+ R+ NHI VG +G T W +R+++++ +E +SGAR++ YI PG
Sbjct: 95 RMIVLELARIANHIWTVGGIGGPLGLYTASHWGVADRDRILDIFEALSGARVYHMYIIPG 154
Query: 690 GVSLDM 707
GV +M
Sbjct: 155 GVRKNM 160
>UniRef50_Q980H3 Cluster: NADH dehydrogenase subunit D; n=2;
Sulfolobaceae|Rep: NADH dehydrogenase subunit D -
Sulfolobus solfataricus
Length = 410
Score = 66.1 bits (154), Expect = 8e-10
Identities = 32/91 (35%), Positives = 53/91 (58%)
Frame = +1
Query: 235 QHDPELRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 414
Q + + PQHP + G +R+ ++L+G+ + D +G +HR EKL E + Y +P +R
Sbjct: 27 QGELNVGPQHPGS-GHMRIFVKLNGDIIEDVDLDVGYVHRAVEKLSENRNYMHLIPLVER 85
Query: 415 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 507
+ + Y +AVEK+L +DVP RA+Y
Sbjct: 86 PAILDSIHMNLGYIIAVEKILGVDVPERAQY 116
Score = 53.6 bits (123), Expect = 5e-06
Identities = 25/69 (36%), Positives = 41/69 (59%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q R+ AE+ R+ +H+ +G A+ +G T F W F +RE + E ++GAR+ +Y+
Sbjct: 115 QYLRSFAAEVNRIASHLYGLGILAIFLGHSTGFMWGFGDREVWVTILEALTGARVTNSYV 174
Query: 681 RPGGVSLDM 707
PGGV D+
Sbjct: 175 IPGGVRKDI 183
>UniRef50_Q8ZWW9 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=4; Pyrobaculum|Rep: NADH-ubiquinone oxidoreductase
subunit - Pyrobaculum aerophilum
Length = 430
Score = 64.1 bits (149), Expect = 3e-09
Identities = 33/89 (37%), Positives = 51/89 (57%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP++ G R ++E+DG+ V P G +HR EKL E + + Q +P F+RL +
Sbjct: 57 PQHPSS-GHTRFIIEVDGDVVVNVTPDPGYVHRTMEKLGETRHWIQNIPLFERLSLPDAI 115
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
Y+LA+E+L DV RA+Y + +
Sbjct: 116 NVTWAYALAIERLAKYDVSPRAQYLRVIM 144
Score = 55.6 bits (128), Expect = 1e-06
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = +3
Query: 474 AEHRCSSAGQVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVS 653
A++ S Q R + E++R+ H+ +G HA+ +G+ T F W + RE +++ + S
Sbjct: 129 AKYDVSPRAQYLRVIMGELSRISTHLYDLGLHAIMIGSSTGFMWAYGLRELLVQLWAMAS 188
Query: 654 GARMHAAYIRPGGVSLDMP 710
G+R ++ PGGV P
Sbjct: 189 GSRTTPTWVLPGGVRTAPP 207
>UniRef50_A1RZ50 Cluster: NADH dehydrogenase; n=1; Thermofilum
pendens Hrk 5|Rep: NADH dehydrogenase - Thermofilum
pendens (strain Hrk 5)
Length = 404
Score = 60.5 bits (140), Expect = 4e-08
Identities = 31/89 (34%), Positives = 50/89 (56%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP++ G +R ++ L G+ + + DP IG +HR EKL E + +A+P +RL +
Sbjct: 29 PQHPSS-GHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGREAIKAIPLLERLTIIDSH 87
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
A+E+LL+++ P RA Y L
Sbjct: 88 NATVGLVTAMERLLDVEPPPRALYLRTLL 116
Score = 58.4 bits (135), Expect = 2e-07
Identities = 26/69 (37%), Positives = 40/69 (57%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RTL +EI R+ +H+ +G + + T F W F +RE ++ E ++GAR+ Y PG
Sbjct: 113 RTLLSEINRIASHLYGMGIAGIMLNHSTMFMWAFGDREVWLQLAEELTGARLTHTYSVPG 172
Query: 690 GVSLDMPLG 716
GV D+P G
Sbjct: 173 GVRRDLPQG 181
>UniRef50_Q8RDB4 Cluster: NADH:ubiquinone oxidoreductase 49 kD
subunit 7; n=17; cellular organisms|Rep: NADH:ubiquinone
oxidoreductase 49 kD subunit 7 - Thermoanaerobacter
tengcongensis
Length = 360
Score = 59.7 bits (138), Expect = 7e-08
Identities = 31/84 (36%), Positives = 46/84 (54%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP + L L ++ E V A P G +HRG E L++ + + Q + D + +
Sbjct: 11 PQHPVLPEPIHLKLIVEDEKVVEAYPAFGYVHRGLELLVKKRDFNQMVYVVDHICGICSA 70
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
+ + Y AVEKL+ IDVP RAK+
Sbjct: 71 IHGETYCQAVEKLIGIDVPERAKF 94
Score = 33.9 bits (74), Expect = 4.1
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R ++AEI R+ +H++ G A G F + REK+M+ E +G R+ + G
Sbjct: 96 RVIWAEIHRIHSHLLWFGLLADAFGFENLFMLSWRIREKVMDILEATAGNRVVISVNIVG 155
Query: 690 GVSLDM 707
GV D+
Sbjct: 156 GVRRDI 161
>UniRef50_A7I491 Cluster: NADH dehydrogenase; n=2; cellular
organisms|Rep: NADH dehydrogenase - Methanoregula boonei
(strain 6A8)
Length = 359
Score = 59.3 bits (137), Expect = 9e-08
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP + L L L+ E V P IG +HRG EKL+E + Y + + +R+ +
Sbjct: 11 PQHPVLPEPIHLDLVLEDERVVDVIPSIGYVHRGLEKLVEKREYPEYIYVAERICGICSY 70
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
+ Y+ VE ++ I+VP RA+Y
Sbjct: 71 IHSNTYAECVEHIMKIEVPERAQY 94
Score = 36.3 bits (80), Expect = 0.76
Identities = 20/69 (28%), Positives = 38/69 (55%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q RT++ E +RL +H++ +G A +G + F ++ RE +++ E +G R+
Sbjct: 93 QYLRTIWTEYSRLHSHLLWLGLFADGMGFESVFMNAWKLREHILDDLEATTGGRVIQGVC 152
Query: 681 RPGGVSLDM 707
+ GGV D+
Sbjct: 153 KIGGVRRDI 161
>UniRef50_O28445 Cluster: F420H2:quinone oxidoreductase, 45 kDa
subunit; n=2; Archaea|Rep: F420H2:quinone
oxidoreductase, 45 kDa subunit - Archaeoglobus fulgidus
Length = 413
Score = 58.4 bits (135), Expect = 2e-07
Identities = 31/89 (34%), Positives = 49/89 (55%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP + G +RL++ + G+ ++ P G +HR EKL E + Y Q +P +R +
Sbjct: 46 PQHPGS-GHMRLIVRVRGDIIQEVIPDPGYVHRSMEKLAENRLYIQNIPLVERPAIMDAP 104
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
Y A+E+ L+I+VP RAK+ L
Sbjct: 105 NFNLGYVRAIEEALDIEVPERAKFLRTML 133
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +3
Query: 468 EAAEHRCSSAGQVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYER 647
EA + + RT+ AE+ R+ H+ A+ +G T F + F RE + E R
Sbjct: 116 EALDIEVPERAKFLRTMLAELGRVGTHLYDAAILAVFLGHTTGFMYPFGLRELICEALVR 175
Query: 648 VSGARMHAAYIRPGGVSLD 704
++GAR +++I PGGV D
Sbjct: 176 LTGARFTSSFIIPGGVRRD 194
>UniRef50_A3DM94 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Staphylothermus marinus F1|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 375
Score = 58.0 bits (134), Expect = 2e-07
Identities = 34/89 (38%), Positives = 47/89 (52%)
Frame = +1
Query: 250 LRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 429
L PQHP A G + L LDGE V D G LHRG EK++EY+ + L R+
Sbjct: 11 LGPQHPGAPGNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDLVMSARICVED 70
Query: 430 MMCNEQCYSLAVEKLLNIDVPLRAKYTEL 516
E Y+ A+E++ I+ P +AKY +
Sbjct: 71 PDHIELTYTHAMEQIFGIEPPEKAKYVRV 99
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/67 (34%), Positives = 40/67 (59%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + AE +RL +H++ + A + A W RE+++++++ VSG R++ YI PG
Sbjct: 98 RVIVAEFSRLASHLLWMMYFAGPIAARYATSWAIAAREEILKWFDYVSGHRIYHHYIFPG 157
Query: 690 GVSLDMP 710
GV D+P
Sbjct: 158 GVRWDIP 164
>UniRef50_Q0W3I1 Cluster: Ech hydrogenase, subunit E; n=1;
uncultured methanogenic archaeon RC-I|Rep: Ech
hydrogenase, subunit E - Uncultured methanogenic
archaeon RC-I
Length = 359
Score = 57.6 bits (133), Expect = 3e-07
Identities = 30/82 (36%), Positives = 45/82 (54%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHP +RL L LDGE V+ + G +HRG EK E+ Y +A +R+ +
Sbjct: 9 PQHPVWIEPIRLKLALDGELVKDVELEAGYVHRGLEKKFEW-DYNKAAYLAERVCGICTQ 67
Query: 436 CNEQCYSLAVEKLLNIDVPLRA 501
+ C+ LAVE + +++P RA
Sbjct: 68 HHSTCFCLAVESTMKLEIPRRA 89
Score = 38.3 bits (85), Expect = 0.19
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 504 VHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIR 683
V R + E+ RL +H++A+G +G F F RE +++ +ER +G R+
Sbjct: 91 VIRNIMLELERLHSHLLAIGLTLEAIGFENLFMLCFRNREIVLDVFERTTGNRVLHGINL 150
Query: 684 PGGVS 698
GGV+
Sbjct: 151 VGGVT 155
>UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Thermofilum pendens Hrk 5|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Thermofilum pendens (strain Hrk 5)
Length = 537
Score = 56.4 bits (130), Expect = 7e-07
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P HPA L +DGE + A IG +HRG EK E +++ + + +R+ +
Sbjct: 159 PYHPAFKEPEYFSLVVDGERIVKAFVRIGFVHRGIEKAAESRSFFRDIFLVERICGICST 218
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
+ C+ AVE+LLN++VP RA Y
Sbjct: 219 SHAWCFVEAVERLLNMEVPRRAAY 242
Score = 54.4 bits (125), Expect = 3e-06
Identities = 25/67 (37%), Positives = 40/67 (59%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RTL AE+ R+ +H + +G G T F W++ RE +M+ E +SG R+H +++ G
Sbjct: 244 RTLVAELERIHSHALWLGLVGYWTGFETMFMWVWGLRETIMDLLEEISGNRVHKSFVTIG 303
Query: 690 GVSLDMP 710
GV D+P
Sbjct: 304 GVRRDVP 310
>UniRef50_Q9V0S5 Cluster: NuoD NADH dehydrognease I, subunit D; n=4;
Thermococcaceae|Rep: NuoD NADH dehydrognease I, subunit
D - Pyrococcus abyssi
Length = 394
Score = 53.6 bits (123), Expect = 5e-06
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQH A ++L++DG V A + G LHRG EKL EY+ + + R+
Sbjct: 35 PQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPESD 93
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
E YSLAV++++ +VP RA++
Sbjct: 94 VPEAIYSLAVDEIIGWEVPERAQW 117
Score = 46.0 bits (104), Expect = 0.001
Identities = 26/93 (27%), Positives = 42/93 (45%)
Frame = +3
Query: 432 DVQRAVLQSGRREAAEHRCSSAGQVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 611
DV A+ E Q RT E+ R+ ++ + + +G T W
Sbjct: 93 DVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWAA 152
Query: 612 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMP 710
RE++M +E ++GAR++ Y PGGV D+P
Sbjct: 153 AYRERLMRLFEELTGARVYHIYTIPGGVRRDIP 185
>UniRef50_A7C1S4 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=1; Beggiatoa sp. PS|Rep: NADH-ubiquinone
oxidoreductase subunit - Beggiatoa sp. PS
Length = 380
Score = 53.2 bits (122), Expect = 6e-06
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Frame = +3
Query: 375 IQDIHPSPAVLRPSGLRVHDVQ-RAVLQSGRREAAEHRCSSAGQVHRTLFAEITRLLNHI 551
IQ++ P + P + + RAV G E E Q R + E++R+ H+
Sbjct: 67 IQNVALVPRICVPDPPPMEETYARAVEMLGGLEVPER-----AQWIRVMMLEMSRIAAHL 121
Query: 552 MAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLG 716
G + G + FW +R+ +++ +E ++GAR++ +I PGGV D+P G
Sbjct: 122 FIAGGTSATTGQYSNMFWGIADRDLILDLFEELTGARIYNMFITPGGVRRDIPDG 176
Score = 52.0 bits (119), Expect = 1e-05
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +1
Query: 238 HDPELR--PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 411
H+ EL P HP G L + L G+ V G LHRG EK++E + + Q +
Sbjct: 15 HEYELYFGPNHPGIEGNYALKVRLSGDEVVGVKADAGYLHRGFEKIMEERLWIQNVALVP 74
Query: 412 RLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
R+ E+ Y+ AVE L ++VP RA++ + +
Sbjct: 75 RICVPDPPPMEETYARAVEMLGGLEVPERAQWIRVMM 111
>UniRef50_A1AUU6 Cluster: NADH dehydrogenase (Ubiquinone) precursor;
n=2; Pelobacter propionicus DSM 2379|Rep: NADH
dehydrogenase (Ubiquinone) precursor - Pelobacter
propionicus (strain DSM 2379)
Length = 409
Score = 52.8 bits (121), Expect = 8e-06
Identities = 26/84 (30%), Positives = 40/84 (47%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHPA + + GE + +G HRG EK E ++Y Q L +R+ +
Sbjct: 10 PQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEERSYLQCLYLLERICGICSH 69
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
+ Y AVE++ + +P RA Y
Sbjct: 70 THSTAYIQAVEEIAGLTIPPRANY 93
Score = 35.1 bits (77), Expect = 1.8
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R+L E+ R+ +H++ +G ++G T + + +RE +M+ + G R++ G
Sbjct: 95 RSLVGELERIHSHLLWLGVAGHEIGFDTLLMYSWRDRELVMDILAELGGNRVNYGINTLG 154
Query: 690 GVSLDM 707
GV D+
Sbjct: 155 GVRRDI 160
>UniRef50_A3DKH4 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Staphylothermus marinus F1|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 406
Score = 52.8 bits (121), Expect = 8e-06
Identities = 29/84 (34%), Positives = 45/84 (53%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
PQHPA H + L DGE + + + G HRG EKL E T+ + + R+ + +
Sbjct: 19 PQHPALHEPVLLKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRDIFIVARVCGICNL 78
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
+ CY A+E++L++ RAKY
Sbjct: 79 VHANCYVRALEEILDMHPNERAKY 102
>UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n=2;
Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase,
chain D - Sulfurovum sp. (strain NBC37-1)
Length = 547
Score = 52.0 bits (119), Expect = 1e-05
Identities = 28/89 (31%), Positives = 49/89 (55%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P HPA+ G +RL + DGE + + DP IG + R E L+ K + A+ +RL ++ +
Sbjct: 187 PTHPAS-GPIRLRIHCDGEEIISIDPDIGYVWRALEHLVTKKDFVGAIVAVERLCFMDNI 245
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
+ Y +AVE++ ++ AK+ + L
Sbjct: 246 NSMTGYCMAVEEIAGTEITEFAKWMRVLL 274
Score = 50.4 bits (115), Expect = 4e-05
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R L E+ R+ +H M +G ++G T W + RE ++F E SGAR+ A I PG
Sbjct: 271 RVLLGEVARVSSHFMGLGGFFNNLGLHTLGLWNMDVREYFLDFLESYSGARIATAAIEPG 330
Query: 690 GV--SLDMPL 713
GV LDM +
Sbjct: 331 GVRYGLDMAM 340
>UniRef50_Q6AB32 Cluster: Putative NADH dehydrogenase; n=1;
Propionibacterium acnes|Rep: Putative NADH dehydrogenase
- Propionibacterium acnes
Length = 396
Score = 50.8 bits (116), Expect = 3e-05
Identities = 24/87 (27%), Positives = 42/87 (48%)
Frame = +1
Query: 262 HPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCN 441
HP G++ + +D + + ++ ++G LHRG EKL E + Y Q R D+ +
Sbjct: 49 HPTRSGLVTIATTVDDDVIISSQVNVGTLHRGDEKLFEVRDYRQIPMLASRHDWTAPFIG 108
Query: 442 EQCYSLAVEKLLNIDVPLRAKYTELCL 522
E + A+E + I +P R + L
Sbjct: 109 ETGAAHAIEDAMGITIPTRVAWIRTLL 135
>UniRef50_Q57935 Cluster: Uncharacterized protein MJ0515; n=9;
Euryarchaeota|Rep: Uncharacterized protein MJ0515 -
Methanococcus jannaschii
Length = 380
Score = 50.4 bits (115), Expect = 4e-05
Identities = 26/84 (30%), Positives = 45/84 (53%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P HP LR+ L LDGE A+ +G +HRG EK++E K + + +R+ +
Sbjct: 12 PIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIHLAERVCGICSY 71
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
+ ++ +E + I++P +AKY
Sbjct: 72 VHTMTFAECIEHISKIEIPDKAKY 95
Score = 40.7 bits (91), Expect = 0.035
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + E+ R+ +H++A + L + T WL RE +M+ E ++G R++ Y G
Sbjct: 97 RVVTCELERIHSHLIASAVYNLSIEHETLAMWLLNVREIIMDLMEMITGNRVNMGYNVIG 156
Query: 690 GVSLDM 707
GV D+
Sbjct: 157 GVRRDI 162
>UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Staphylothermus marinus F1|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 548
Score = 49.6 bits (113), Expect = 8e-05
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Frame = +1
Query: 211 KTGRKESTQHDPELRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYT 390
K R+ T + P HPA H L ++GE V + + +HRG EKL E +
Sbjct: 158 KVPRQPPTGQRIPIGPYHPALHEPEYFELYVEGEKVVDVEYNGFHVHRGIEKLAEAPRFN 217
Query: 391 -QALPYF-DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 507
Q +P+ +R+ + + Y+++VE+ IDVP RA+Y
Sbjct: 218 YQKIPFLAERICGICGFVHSVSYTMSVERAAKIDVPERAEY 258
Score = 32.7 bits (71), Expect = 9.4
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R++ EI RL +H++ +G +G F + REK+M E ++G+R G
Sbjct: 260 RSIILEIERLHSHLLWIGVVCHLLGYDAGFMHTWRIREKVMVLAELLTGSRKTYGINLVG 319
Query: 690 GVSLDM 707
GV D+
Sbjct: 320 GVRKDI 325
>UniRef50_Q8TY43 Cluster: Ni,Fe-hydrogenase III large subunit; n=1;
Methanopyrus kandleri|Rep: Ni,Fe-hydrogenase III large
subunit - Methanopyrus kandleri
Length = 409
Score = 47.6 bits (108), Expect = 3e-04
Identities = 29/105 (27%), Positives = 47/105 (44%)
Frame = +1
Query: 211 KTGRKESTQHDPELRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYT 390
+TG E H + P HP LR+ L + GE V +G HRG EK++E +
Sbjct: 18 ETGEIEPISHRVPVGPNHPILKEPLRIKLAVRGEEVVDCKVEMGYCHRGIEKIMEGMPWQ 77
Query: 391 QALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYTELCLR 525
+A +R+ + + C+ VEKL D R + + ++
Sbjct: 78 KAAFLAERVCGICSHAHNMCFIGGVEKLAEGDPAPRGLFLRVLVQ 122
Score = 41.5 bits (93), Expect = 0.020
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = +3
Query: 459 GRREAAEHRCSSAGQVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEF 638
G + AE + G R L E+ R+ +H++A + + T F W RE++++
Sbjct: 101 GVEKLAEGDPAPRGLFLRVLVQELDRIQSHLIANAAYFYSIEHETMFVWNMNTRERVLDC 160
Query: 639 YERVSGARMHAAYIRPGGVSLDM 707
E ++G R+ + GGV +D+
Sbjct: 161 IEEITGNRILTGWNVVGGVRMDV 183
>UniRef50_A3CUR5 Cluster: NADH dehydrogenase; n=3;
Methanomicrobiales|Rep: NADH dehydrogenase -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 362
Score = 46.4 bits (105), Expect = 7e-04
Identities = 21/66 (31%), Positives = 40/66 (60%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + E+ R+ +HI+A ++ + T +L RE +++ ER++G+R++ AY+ PG
Sbjct: 98 RVVVNELDRMASHILANFSYCYTIEHETLAMYLLNIRETVLDNLERITGSRINTAYMIPG 157
Query: 690 GVSLDM 707
GV D+
Sbjct: 158 GVRFDL 163
>UniRef50_Q8U0Z6 Cluster: Mbh12 membrane bound hydrogenase alpha;
n=4; Thermococcaceae|Rep: Mbh12 membrane bound
hydrogenase alpha - Pyrococcus furiosus
Length = 427
Score = 46.0 bits (104), Expect = 0.001
Identities = 24/84 (28%), Positives = 41/84 (48%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P HP + ++ LDGE + D +G RG + + + Y Q + +R+ +
Sbjct: 14 PIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIGMRRNYVQIMYLAERMCGICSF 73
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
+ Y AVE++ I+VP RA+Y
Sbjct: 74 SHNHTYVRAVEEMAGIEVPERAEY 97
Score = 40.7 bits (91), Expect = 0.035
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + E+ R+ +H++ +G D+G T + RE++M+ E VSG R++ + + G
Sbjct: 99 RVIVGELERIHSHLLNLGVVGHDIGYDTVLHLTWLARERVMDVLEAVSGNRVNYSMVTIG 158
Query: 690 GVSLDM 707
GV D+
Sbjct: 159 GVRRDI 164
>UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein;
n=1; uncultured methanogenic archaeon RC-I|Rep:
Hydrogenase, large subunit-like protein - Uncultured
methanogenic archaeon RC-I
Length = 524
Score = 46.0 bits (104), Expect = 0.001
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +1
Query: 307 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 486
GE V + +G +H+G EK+ E TY + + +R + M + Y AVE+L I+
Sbjct: 191 GEPVLMLEIRMGYVHKGIEKISESMTYDKGVFLSERTSGDNGMAHSTAYCQAVEQLAGIE 250
Query: 487 VPLRAKY 507
VP RA+Y
Sbjct: 251 VPDRARY 257
Score = 39.5 bits (88), Expect = 0.082
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RT+F E+ R+ NH+ VG +LD + RE+M++ E ++G+R+ + + G
Sbjct: 259 RTVFLEMERIYNHLGDVGGISLDTAYNVGAQHAYILRERMLQLNECITGSRLLRSVNKIG 318
Query: 690 GVSLDM 707
GV D+
Sbjct: 319 GVRQDL 324
>UniRef50_Q1PZL4 Cluster: Similar to membrane-bound
[NiFe]-hydrogenase-3, large subunit; n=1; Candidatus
Kuenenia stuttgartiensis|Rep: Similar to membrane-bound
[NiFe]-hydrogenase-3, large subunit - Candidatus
Kuenenia stuttgartiensis
Length = 531
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/67 (32%), Positives = 38/67 (56%)
Frame = +1
Query: 307 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 486
G+++ D + H+GTEK+ E YT+AL +R+ V + Y A+EK+ I+
Sbjct: 197 GDSIFYLDAKLFFTHKGTEKIFETMPYTKALFLAERICGVCAASHATGYCQAIEKVAEIE 256
Query: 487 VPLRAKY 507
+P RA++
Sbjct: 257 IPPRARF 263
Score = 34.3 bits (75), Expect = 3.1
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RT+ E+ R+ NHI VG L F RE + + E ++G R + G
Sbjct: 265 RTIVMELERIYNHIGDVGNICAGTAFLLGIAHGFRIREYLQQLNETITGNRYLRGMLAIG 324
Query: 690 GVSLDM 707
GV D+
Sbjct: 325 GVRFDI 330
>UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Thermofilum pendens Hrk 5|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit - Thermofilum
pendens (strain Hrk 5)
Length = 567
Score = 45.6 bits (103), Expect = 0.001
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDRLDYVSM 432
P H A + + LDGE V D + +HRG EKL E + TY Q +R+ +
Sbjct: 185 PVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAERICGICG 244
Query: 433 MCNEQCYSLAVEKLLNIDVPLRAKY 507
+ Y AVE+ L I+VP RA Y
Sbjct: 245 YAHSCAYCQAVEQALGIEVPERALY 269
Score = 35.5 bits (78), Expect = 1.3
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RTL E+ RL +H++ +G G F F+ REK+M E ++G R G
Sbjct: 271 RTLMLEVERLHSHLLNLGLACHLAGFDWGFMAFFKAREKVMYMAELLTGGRKTYGMNVVG 330
Query: 690 GVSLDM 707
GV D+
Sbjct: 331 GVRRDI 336
>UniRef50_P31895 Cluster: Carbon monoxide-induced hydrogenase; n=9;
Bacteria|Rep: Carbon monoxide-induced hydrogenase -
Rhodospirillum rubrum
Length = 361
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/84 (30%), Positives = 42/84 (50%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P H A + +E+DGE V + D G +HRG E L + Q + +R+ +
Sbjct: 10 PLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTERVCSLCSN 69
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
+ Q Y +A+E + + VP RA+Y
Sbjct: 70 SHPQTYCMALESITGMVVPPRAQY 93
>UniRef50_Q2FTW4 Cluster: NADH dehydrogenase; n=2;
Methanomicrobiales|Rep: NADH dehydrogenase -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 409
Score = 44.4 bits (100), Expect = 0.003
Identities = 25/95 (26%), Positives = 47/95 (49%)
Frame = +1
Query: 223 KESTQHDPELRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 402
++ ++ + P HPA + +++GE + D G HRG E + + Q L
Sbjct: 3 QKKAPYELPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMGMRRNPVQILH 62
Query: 403 YFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 507
DR+ + + + ++ AVE++ +I+VP RA Y
Sbjct: 63 LCDRICGICGVHHALVFAQAVEQIADIEVPDRAYY 97
Score = 41.1 bits (92), Expect = 0.027
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RT+ AE R+ +HI+ G A ++G T F+ ++ RE+ ++ E ++G R++ + G
Sbjct: 99 RTIIAEFERIQSHILWAGVAAHELGFDTLFYLAWQIREESVDVIEYITGNRVNYGIMMLG 158
Query: 690 GVSLDM 707
G D+
Sbjct: 159 GTRRDI 164
>UniRef50_Q0BPG8 Cluster: Formate hydrogenlyase subunit 5; n=1;
Granulibacter bethesdensis CGDNIH1|Rep: Formate
hydrogenlyase subunit 5 - Granulobacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1)
Length = 517
Score = 44.0 bits (99), Expect = 0.004
Identities = 25/96 (26%), Positives = 44/96 (45%)
Frame = +1
Query: 214 TGRKESTQHDPELRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQ 393
+ R + H+ + P HP +L L L G +R A+ +G HRG + L+ K
Sbjct: 151 SSRPDIALHERSIGPVHPLMREPAQLRLHLHGTLIRQAEWRLGYTHRGIQWLMRGKPLRD 210
Query: 394 ALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRA 501
A+ R+ + + + ++ A E L ++ P RA
Sbjct: 211 AIRIAARITGDAALAHGLAFARAAEAALRLEPPPRA 246
>UniRef50_Q4X2T6 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 152
Score = 43.2 bits (97), Expect = 0.007
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +3
Query: 318 PCSRSSHRSPAPWY*KTDRIQDIHPSPAVLRPSGLRVHDV 437
P R +HR A + K R QD+HP A+ P GLRVHDV
Sbjct: 113 PACRPAHRPVASRHRKAGRAQDLHPGAALHGPPGLRVHDV 152
>UniRef50_Q3ZW31 Cluster: Hydrogenase, group 4, HycE subunit; n=3;
Dehalococcoides|Rep: Hydrogenase, group 4, HycE subunit
- Dehalococcoides sp. (strain CBDB1)
Length = 526
Score = 42.7 bits (96), Expect = 0.009
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +3
Query: 471 AAEHRCSSA----GQVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEF 638
A EH CSS + R + E+ RL +H+ + DVG L RE++M +
Sbjct: 247 AVEHICSSRPPRRAEQLRLILLEMERLYSHLADLSGMLTDVGYPVGAASLSALREELMRW 306
Query: 639 YERVSGARMHAAYIRPGGVSLDMP 710
+R++G+R I PGG+ D+P
Sbjct: 307 NKRLTGSRFLKGIIAPGGLLKDIP 330
>UniRef50_Q24ST8 Cluster: Formate hydrogenlyase subunit 5; n=2;
Desulfitobacterium hafniense|Rep: Formate hydrogenlyase
subunit 5 - Desulfitobacterium hafniense (strain Y51)
Length = 554
Score = 41.9 bits (94), Expect = 0.015
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +1
Query: 307 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 486
GETV D + H+G EKL+E K + L +R+ V + + Y AVEKL ++
Sbjct: 212 GETVLHLDAQLFYTHKGIEKLLEGKDLEEGLKIVERVCGVCAVSHALAYCEAVEKLKGME 271
Query: 487 VP 492
VP
Sbjct: 272 VP 273
>UniRef50_Q9UYN4 Cluster: Hydrogenase 4, component G or formate
hydrogen lyase, subunit 5; n=1; Pyrococcus abyssi|Rep:
Hydrogenase 4, component G or formate hydrogen lyase,
subunit 5 - Pyrococcus abyssi
Length = 588
Score = 41.5 bits (93), Expect = 0.020
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 226 ESTQHDPELRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALP 402
E T P + P H L + GE + D HRG EK+ E + TY Q L
Sbjct: 194 EGTSTVP-MGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLF 252
Query: 403 YFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
+R+ + + Y++A+E+L ++++P RA+Y L
Sbjct: 253 LAERICGICGYQHSVSYAMAIERLADVEIPDRARYIRTLL 292
Score = 40.3 bits (90), Expect = 0.047
Identities = 25/66 (37%), Positives = 34/66 (51%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RTL E+ R+ NH++ VG A VG T F + RE +M ER++G R G
Sbjct: 289 RTLLLELERIHNHLLWVGIAAHLVGYDTGFMHAWRIREPVMWLMERLTGNRKQYGMNIVG 348
Query: 690 GVSLDM 707
GV D+
Sbjct: 349 GVRRDI 354
>UniRef50_P77329 Cluster: Hydrogenase-4 component G; n=19;
Bacteria|Rep: Hydrogenase-4 component G - Escherichia
coli (strain K12)
Length = 555
Score = 41.5 bits (93), Expect = 0.020
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 295 LELDGETVRAADPHIGLLHRGTEKLIEYKT-YTQALPYFDRLDYVSMMCNEQCYSLAVEK 471
L +DGE + AD + +HRG EKL E + Y + DR+ + + Y+ +VE
Sbjct: 201 LFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVEN 260
Query: 472 LLNIDVPLRA 501
L I+VP RA
Sbjct: 261 ALGIEVPQRA 270
Score = 36.7 bits (81), Expect = 0.58
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R++ E+ RL +H++ +G VG T F F REK M E + G+R G
Sbjct: 274 RSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIG 333
Query: 690 GVSLDM 707
GV D+
Sbjct: 334 GVRRDI 339
>UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precursor;
n=50; Bacteria|Rep: Formate hydrogenlyase subunit 5
precursor - Escherichia coli (strain K12)
Length = 569
Score = 41.5 bits (93), Expect = 0.020
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 295 LELDGETVRAADPHIGLLHRGTEKLIEYKT-YTQALPYFDRLDYVSMMCNEQCYSLAVEK 471
L +DGE + AD + +HRG EKL E + Y + DR+ + + Y+ +VE
Sbjct: 199 LFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVEN 258
Query: 472 LLNIDVPLRAK 504
+ I VP RA+
Sbjct: 259 AMGIQVPERAQ 269
Score = 34.3 bits (75), Expect = 3.1
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
Q+ R + E+ RL +H++ +G G + F F RE M+ E ++GAR
Sbjct: 269 QMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLN 328
Query: 681 RPGGVSLDM 707
GG+ D+
Sbjct: 329 LIGGIRRDL 337
>UniRef50_UPI000155B933 Cluster: PREDICTED: similar to NADH
dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), partial; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to NADH
dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), partial - Ornithorhynchus
anatinus
Length = 127
Score = 41.1 bits (92), Expect = 0.027
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGE 312
PQHPAAHGVLRLV+EL GE
Sbjct: 108 PQHPAAHGVLRLVMELSGE 126
>UniRef50_UPI00015BC86A Cluster: UPI00015BC86A related cluster; n=1;
unknown|Rep: UPI00015BC86A UniRef100 entry - unknown
Length = 420
Score = 40.3 bits (90), Expect = 0.047
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 349 HRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYTELCL 522
H+G EKL E KT + L +R+ + + + AVEK+ +ID+P +A+Y L
Sbjct: 108 HKGIEKLSEGKTPEEGLKLSERISGDHSVAHSLAFVKAVEKIYDIDIPPKARYIRAIL 165
>UniRef50_Q2RXM4 Cluster: NADH-ubiquinone oxidoreductase; n=1;
Rhodospirillum rubrum ATCC 11170|Rep: NADH-ubiquinone
oxidoreductase - Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255)
Length = 561
Score = 39.9 bits (89), Expect = 0.062
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 304 DGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF-DRLDYVSMMCNEQCYSLAVEKLLN 480
+GE + +D HRG EKL + +P+ +R+ + + CY +AVE
Sbjct: 197 EGEEIIGSDYRGFFSHRGIEKLSDTVLDYNQVPFMAERVCGICGFVHSACYCMAVEDAAG 256
Query: 481 IDVPLRAKY 507
I++P RAKY
Sbjct: 257 IEIPPRAKY 265
>UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;
uncultured methanogenic archaeon RC-I|Rep:
[NiFe]-hydrogenase, large subunit - Uncultured
methanogenic archaeon RC-I
Length = 486
Score = 39.9 bits (89), Expect = 0.062
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
RT+ E+ R+ +H+MA+G VG T RE + + E VSG R+ I G
Sbjct: 203 RTMICEMERIQSHLMAIGILGDLVGYKTMLMQFLRIREDIQDSLELVSGQRVTHGLITLG 262
Query: 690 GVSLDM 707
GV D+
Sbjct: 263 GVRRDI 268
Score = 38.7 bits (86), Expect = 0.14
Identities = 24/82 (29%), Positives = 40/82 (48%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P HPA + ++ E V+ AD +G HR KL+E + Y + + +R+ +
Sbjct: 118 PYHPAFIESNYFKMAVEDEVVKKADLKLGFNHRSIIKLMERRDYYKDIYLAERVCGLCNA 177
Query: 436 CNEQCYSLAVEKLLNIDVPLRA 501
+ + LAVE + + VP RA
Sbjct: 178 HHALSFCLAVENIGQVTVPKRA 199
>UniRef50_A6DBV4 Cluster: Ech hydrogenase, subunit EchE, putative;
n=1; Caminibacter mediatlanticus TB-2|Rep: Ech
hydrogenase, subunit EchE, putative - Caminibacter
mediatlanticus TB-2
Length = 363
Score = 39.5 bits (88), Expect = 0.082
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +1
Query: 259 QHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDRLDYVSMM 435
QH A + + + E + D +G +HRG EK K +T R+ +
Sbjct: 14 QHIALPEPVSFLFTTENEVITDVDVDVGYVHRGIEKAAITKFEFTNVAYLLTRICGFCSI 73
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTEL 516
+ Y +EKLL +VP RA+Y +
Sbjct: 74 THASGYHHGIEKLLGAEVPKRAEYIRM 100
Score = 39.1 bits (87), Expect = 0.11
Identities = 24/66 (36%), Positives = 33/66 (50%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R L E+ R+ +HI+A G A VG F REK ME E ++G R+ + G
Sbjct: 99 RMLVTELDRIHSHILANGHVAEVVGYENLFMQSVRYREKAMELLELITGNRIQYDIYKIG 158
Query: 690 GVSLDM 707
GV D+
Sbjct: 159 GVRKDL 164
>UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium
cellulolyticum H10|Rep: NADH dehydrogenase - Clostridium
cellulolyticum H10
Length = 530
Score = 38.7 bits (86), Expect = 0.14
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 307 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 486
GE + + + +HRG EKL E + Y + L + +R+ N + A+EKL I
Sbjct: 195 GEPIINLEAKLYYVHRGLEKLCENQHYMKVLLFSERISGDETFTNSLAFCQAIEKLNGIT 254
Query: 487 -VPLRAKYTEL 516
+P RA Y+ +
Sbjct: 255 YIPERAVYSRV 265
>UniRef50_Q10884 Cluster: POSSIBLE FORMATE HYDROGENASE HYCE; n=10;
Actinomycetales|Rep: POSSIBLE FORMATE HYDROGENASE HYCE -
Mycobacterium tuberculosis
Length = 492
Score = 37.9 bits (84), Expect = 0.25
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 307 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 486
GET+ + +HRG EKL + T A+ +R+ + + +SLA+E L I+
Sbjct: 166 GETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTSAAHALAHSLAIEDALGIE 225
Query: 487 VP 492
+P
Sbjct: 226 LP 227
Score = 36.7 bits (81), Expect = 0.58
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 501 QVHR--TLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAA 674
+VHR L E+ RL NH +G A DVG RE ++ V+G R+
Sbjct: 229 EVHRLRALIVELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRG 288
Query: 675 YIRPGGVSL 701
IR GGV+L
Sbjct: 289 AIRAGGVAL 297
>UniRef50_Q0LPD5 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Herpetosiphon aurantiacus ATCC 23779|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Herpetosiphon aurantiacus ATCC 23779
Length = 368
Score = 37.1 bits (82), Expect = 0.44
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = +1
Query: 250 LRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 429
L P HP +R+VL ++GE + + G +RG + + T Q L +
Sbjct: 17 LGPFHPDWQTPMRMVLRVEGEQIADVEFRDGYTNRGISERLTRTTIPQGLHLVSHICAAD 76
Query: 430 MMCNEQCYSLAVEKLLNIDVPLRA 501
+ + LA+E+LL I+ RA
Sbjct: 77 SHAHSLGFCLALEQLLKINASERA 100
>UniRef50_A5FW46 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Acidiphilium cryptum JF-5|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Acidiphilium cryptum (strain JF-5)
Length = 476
Score = 37.1 bits (82), Expect = 0.44
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +1
Query: 307 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 486
GE + PH+ L HRG E +T L +R+ V + + Y+ A+E +
Sbjct: 145 GEAILHYVPHLFLKHRGMEDRFVDQTPETGLVLAERVSGVGSVAHALAYAQAMEAAAQVA 204
Query: 487 VPLRAKY 507
VP RA+Y
Sbjct: 205 VPGRARY 211
>UniRef50_Q6APF2 Cluster: Related to hydrogenase, component
E-formate hydrogenlyase subunit 5; n=1; Desulfotalea
psychrophila|Rep: Related to hydrogenase, component
E-formate hydrogenlyase subunit 5 - Desulfotalea
psychrophila
Length = 509
Score = 36.7 bits (81), Expect = 0.58
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 501 QVHRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 680
++ RT E+ R+ NHI +G A D P + R + + + +SG R +
Sbjct: 239 KIIRTTALELERICNHIGDLGALAGDAAFNPPAAYFGRIRGEFLNLLQVLSGNRFGKGLV 298
Query: 681 RPGGVS 698
RPGGV+
Sbjct: 299 RPGGVT 304
>UniRef50_Q8THY6 Cluster: Hydrogenase-3, subunit E; n=4;
Methanomicrobia|Rep: Hydrogenase-3, subunit E -
Methanosarcina acetivorans
Length = 545
Score = 36.3 bits (80), Expect = 0.76
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = +1
Query: 307 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 486
GE + + + + HRG EKL E K+ ++ + + + M N + +AVE+ I
Sbjct: 199 GEPIFSLEIRLFYKHRGIEKLAEGKSPSECVALAEAVSGDESMANATGFCMAVEQACGIS 258
Query: 487 VPLRAK 504
VP RA+
Sbjct: 259 VPERAE 264
>UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Pelobacter propionicus DSM 2379|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit - Pelobacter
propionicus (strain DSM 2379)
Length = 557
Score = 34.7 bits (76), Expect = 2.3
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF-DRLDYVSM 432
P HP L +DGE VR + ++HRG EKL E +P +R+ +
Sbjct: 177 PFHPTLDEPEHFRLYVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERICGICG 236
Query: 433 MCNEQCYSLAVEKLLNIDVPLRAKY 507
+ + AVE + VP RA++
Sbjct: 237 CVHSLAFCQAVENGAGVIVPPRAEF 261
>UniRef50_A7HGW8 Cluster: NADH-ubiquinone oxidoreductase chain
49kDa; n=11; Bacteria|Rep: NADH-ubiquinone
oxidoreductase chain 49kDa - Anaeromyxobacter sp.
Fw109-5
Length = 515
Score = 34.3 bits (75), Expect = 3.1
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
R + E+ RL NH+ +G A DVG L + R + + + G R + PG
Sbjct: 250 RGVALELERLANHVGDLGALAGDVGFLPTASYCGALRAEFLNATAEICGNRFGRGLLVPG 309
Query: 690 GVSLDM 707
GV D+
Sbjct: 310 GVRFDL 315
>UniRef50_Q82AU3 Cluster: Putative uncharacterized protein; n=1;
Streptomyces avermitilis|Rep: Putative uncharacterized
protein - Streptomyces avermitilis
Length = 313
Score = 33.9 bits (74), Expect = 4.1
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +1
Query: 217 GRKESTQHDPELRPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQA 396
G +EST H+P + PAAH + R H+ ++ R EKL E+ + A
Sbjct: 154 GPRESTAHEPAVN--EPAAHEPTANEPAANEPAARPKLRHLAIVARDPEKLAEFYSSVFA 211
Query: 397 LPYFDRLDYVSMMCNEQCYSLA-VEKLLNIDVPL 495
+ F R S ++ SLA ++ L+ D P+
Sbjct: 212 MELFHRDPDGSCFLSDGYLSLALIKHRLDGDTPV 245
>UniRef50_Q3W8F3 Cluster: Glycosyl transferase, family 2; n=2;
Frankia|Rep: Glycosyl transferase, family 2 - Frankia
sp. EAN1pec
Length = 888
Score = 33.9 bits (74), Expect = 4.1
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 71 AVHNVNSQRDGHRWFP--DPDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNMI 244
AVH ++ GHRW PD V EGP + D ++ L+ + + E R
Sbjct: 315 AVHGAFNEVTGHRWTSVYTPDVVAVGEGPANWTDFFSQQLRWARGANEVMVTEAPRRLKA 374
Query: 245 LNFGPSIQPLT 277
L++GP + LT
Sbjct: 375 LSWGPRLHYLT 385
>UniRef50_Q6L8F0 Cluster: Medium-chain-fatty-acid--CoA ligase; n=6;
Bacteria|Rep: Medium-chain-fatty-acid--CoA ligase -
Thermus thermophilus
Length = 541
Score = 33.5 bits (73), Expect = 5.4
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +3
Query: 396 PAVLRPSGLRVHD-VQRAVLQSGRREAAEHRCSSAGQVHRTLFAEITRLLNHIMAVGTHA 572
P+ + L + D ++RA GR+E G+VHRT +AE+ + +M G A
Sbjct: 10 PSTMMDEELNLWDFLERAAALFGRKEVVSRL--HTGEVHRTTYAEVYQRARRLMG-GLRA 66
Query: 573 LDVGALTPFFWLFEEREKMMEFYERV--SGARMHAA 674
L VG L + +E Y V GA +H A
Sbjct: 67 LGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102
>UniRef50_Q4DZG8 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein -
Trypanosoma cruzi
Length = 1951
Score = 33.5 bits (73), Expect = 5.4
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1
Query: 385 MSCIRSVFQYHGAGDLCEDLLHGLSLRPVPVRDAAPRER 269
+ C+ + F HG+G + D+L + +RP+ ++ A R+R
Sbjct: 1039 VECVLASFSIHGSGPIFVDVLFDVEIRPIRPQEGADRKR 1077
>UniRef50_A6UVJ6 Cluster: Hydrogenase, component E-formate
hydrogenlyase subunit 5-like protein; n=1; Methanococcus
aeolicus Nankai-3|Rep: Hydrogenase, component E-formate
hydrogenlyase subunit 5-like protein - Methanococcus
aeolicus Nankai-3
Length = 518
Score = 33.5 bits (73), Expect = 5.4
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 507 HRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRP 686
+R L EI R+ NHI +G A DVG + + R + + + G R + +RP
Sbjct: 244 YRRLLLEIERIANHIGTMGGLAGDVGYIPTASYYGRIRGDFLNMFVLICGNRFGRSSVRP 303
Query: 687 GG 692
G
Sbjct: 304 FG 305
>UniRef50_Q58433 Cluster: Uncharacterized protein MJ1027; n=6;
Methanococcales|Rep: Uncharacterized protein MJ1027 -
Methanococcus jannaschii
Length = 377
Score = 33.5 bits (73), Expect = 5.4
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +1
Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
P HP RL L ++ E ++ A+ IG+ +RG E ++E + +++ +
Sbjct: 14 PVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISILSEKICGICSH 73
Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
+ C E+ +I+VP RA+Y
Sbjct: 74 IHVWCNVTVTERGCDIEVPERAEY 97
>UniRef50_Q89GK2 Cluster: Blr6343 protein; n=11;
Alphaproteobacteria|Rep: Blr6343 protein -
Bradyrhizobium japonicum
Length = 503
Score = 33.1 bits (72), Expect = 7.1
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 307 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 486
GETV + +G H+G E L+ +A+ R+ S + +S A E L +
Sbjct: 171 GETVARLEQRLGYTHKGIEGLMTGANLERAVQLAGRVSGDSTVAYAFAFSRAAEAALQLV 230
Query: 487 VPLRAKYTELCL 522
VP RA + L
Sbjct: 231 VPDRAAWLRALL 242
>UniRef50_A2X2W4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 605
Score = 32.7 bits (71), Expect = 9.4
Identities = 21/95 (22%), Positives = 42/95 (44%)
Frame = -1
Query: 508 CTWPAEEHRCSAASRRPDCSTARCTSWTRSPDGRSTAGLGCMSCIRSVFQYHGAGDLCED 329
C W ++ R +AA RR + + T W G + + +V +H A D+C
Sbjct: 345 CGWVEDDLRSAAAYRRFNDRRGQWTLWREQCYGEMGWSVAKLPFDEAVLVWHVATDICLH 404
Query: 328 LLHGLSLRPVPVRDAAPRERLDAGAEVQDHVAYFL 224
+++ PV A +++ A ++ +++ Y L
Sbjct: 405 CTEYINISSSPVAGA---DKITAVMKISNYMMYLL 436
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 741,231,784
Number of Sequences: 1657284
Number of extensions: 15289953
Number of successful extensions: 45880
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 43877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45855
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -