Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0353
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         27   2.0  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.6  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   4.7  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   4.7  
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi...    26   6.2  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    26   6.2  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   6.2  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.2  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    25   8.2  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   8.2  

>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 242 SCCVLSFRPVL*CCYKEQVSMIWST 168
           SC +L  +PV  C Y E+++  W T
Sbjct: 289 SCTILKSKPVSLCVYPEKITFNWLT 313


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 233 RNMILNFGPSIQPLTG--CCVSYWNWTERQSV 322
           +N +LNF P +QP T    CV Y  ++ +Q +
Sbjct: 144 KNSLLNFDPQVQPSTSFWVCVPYSCFSNQQPI 175


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 537 LLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 695
           L NH +A G H  D+  +TP F    +  K + FY    G  +    I PG +
Sbjct: 814 LSNHPIAGGVHLPDLTVVTPVF----DNNKDIIFYCAARGHMVDVGGITPGSM 862


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 372  DQFFSTTVQETYVRICCTDCLSVQFQYETQHPVSGWML 259
            D+  S TV E+Y +I C    + + Q    H + GW L
Sbjct: 1901 DKEKSCTVSESYKQIDCDTYEATRLQKLLLHSIGGWPL 1938


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 92  QRDGHRWFPDPDFVKQFEGPV 154
           Q DG   + D +FV+QFE PV
Sbjct: 50  QEDGSEVYVDREFVEQFECPV 70


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 203 CYKEQVSMIWSTHQDT*LALQIVSQSLDQGTNGAHLFG-SSH 81
           CY EQ   + + H+DT   +++V+ +L+  +     F  +SH
Sbjct: 578 CYLEQCLRLNTLHEDTTFPMRVVNYALEYSSKALDKFAENSH 619


>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
           Tom22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 558 VGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMP 710
           + T AL +G   PF    EE  ++ E+ +++   R     I PG  S  +P
Sbjct: 95  ISTSALLLGV--PFMMSLEEEAQLTEYEKQIKDQRGANEVIAPGATSGALP 143


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 174 VDSSGYMTGPSNCFTKS 124
           VD+SGY+T PSN   +S
Sbjct: 130 VDASGYVTDPSNLIERS 146


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 281 CCVSYWNWTER 313
           CC+S W+WT R
Sbjct: 157 CCLSNWSWTHR 167


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 372 DQFFSTTVQETYVRICCTDCL 310
           D+FF  T Q   VR  C DCL
Sbjct: 414 DRFFPGTFQTGVVRTNCVDCL 434


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 149 PVMYPDESTKSLKPVPYNSIIKPAEK 226
           P+    ++ ++LKPV Y+++ KP +K
Sbjct: 437 PLSIFKDTVRALKPVEYHTMCKPVKK 462


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 493 EEHRCSAASRRPDCSTARCTSWTRSPDGRSTAGLG 389
           +E  C  + + PD ++ RC       +G  T  LG
Sbjct: 380 DERSCFTSKQNPDTTSDRCRQQESKDNGNRTVFLG 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,941
Number of Sequences: 5004
Number of extensions: 60141
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)