Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0353
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0460 + 3276855-3277967                                           31   1.2  
03_01_0217 - 1712979-1713794                                           31   1.2  
01_01_0220 + 1866989-1868393,1868465-1869153                           29   4.9  
11_03_0128 - 10437407-10438049,10438097-10438272                       28   6.5  
04_01_0240 + 3137859-3138461                                           28   6.5  
09_02_0295 - 7039870-7040634                                           28   8.6  
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311...    28   8.6  
04_04_0807 - 28192320-28192494,28192611-28192759,28192882-281929...    28   8.6  
02_02_0317 + 8893593-8894207                                           28   8.6  

>06_01_0460 + 3276855-3277967
          Length = 370

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -1

Query: 571 ACVPTAMMWFSRRVISAN-RVLCTWPAEEHRCSAASRRPDCSTARCTSWTRSPDGRSTAG 395
           A  P A     RRV+ AN R    +PAE    +A+S  P C  A   +    PDG   A 
Sbjct: 129 ASAPRAASRRLRRVLLANFRFWLAFPAEPSSAAASSPLPSCRGALACARFDGPDGPLAAQ 188

Query: 394 L 392
           L
Sbjct: 189 L 189


>03_01_0217 - 1712979-1713794
          Length = 271

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
 Frame = -1

Query: 508 CTWPAEEHR-CSAASRRPDCSTARCTSWTRSPDGRSTAGLGC 386
           C+ PA+  R C    R   C T     W   PDG ST    C
Sbjct: 172 CSRPAKRRRKCGEEKRCGHCQTTETPQWRVGPDGPSTLCNAC 213


>01_01_0220 + 1866989-1868393,1868465-1869153
          Length = 697

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
 Frame = -1

Query: 565 VPTAMMWFSRRVISANRVLCTWP-------AEEHRCSAA---SRRPDCSTARC---TSWT 425
           +P AM  F       N  LC+ P       A++   SAA   S  P C  A     +S +
Sbjct: 215 IPVAMAKFPVGAFGGNAGLCSAPLPPCKDEAQQPNASAAVNASATPPCPPAAAMVASSPS 274

Query: 424 RSPDGRSTAGLGCMSC 377
             P G +T+G G MSC
Sbjct: 275 AKPAGAATSGKGKMSC 290


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -1

Query: 604 QKKGVSAPTSSACVPTAMMWFSRRVISANRVLCTWPAEE-HRCSAASRRPDCSTARCTSW 428
           +K+G            AM+ F   V    R L    A   +RC +AS    C ++RC S 
Sbjct: 178 RKRGRGGSNDDDLTKYAMVIFLPDVRDGLRGLVEKMASRPNRCGSASSW--CPSSRCPSP 235

Query: 427 TRSPDGRSTAGLGCMSCIRS 368
           T S +   + G GC S + S
Sbjct: 236 TASSESLGSWGSGCRSHLSS 255


>04_01_0240 + 3137859-3138461
          Length = 200

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 21/60 (35%), Positives = 25/60 (41%)
 Frame = -2

Query: 189 GFNDLVDSSGYMTGPSNCFTKSGSGNQRCPSLWEFTL*TAGMFFNKTDFWPKLGDFRNKT 10
           GF DL  SS   T  S C     S N     LW+ T      F  K  F   L D++NK+
Sbjct: 63  GFVDLTCSSS-KTDFSKCKPGQMSYNHSSVPLWDRTTNELASFATKFTFKIVLSDYKNKS 121


>09_02_0295 - 7039870-7040634
          Length = 254

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 415 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYTEL 516
           L Y+S +C   CY  A       DV +RA+Y  L
Sbjct: 167 LVYISGLCVVYCYMKASNLFSRFDVHVRARYNRL 200


>05_03_0645 +
           16529635-16529794,16530188-16530312,16531100-16531173,
           16531961-16532006,16532638-16532730,16534429-16535886
          Length = 651

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 526 SANRVLCTWPA-EEHRCSAASRRPDCSTARCTSWTRSPDGRSTAG 395
           S +R+  +W A    R  AA   P CS++R T+ + SP   ST+G
Sbjct: 479 SLDRLSGSWRACSGSRAVAAVAAPGCSSSRRTTGSWSPGTGSTSG 523


>04_04_0807 -
           28192320-28192494,28192611-28192759,28192882-28192980,
           28193212-28193433,28193522-28193611,28193837-28193959,
           28194040-28194199,28194288-28194347,28194484-28194574,
           28194667-28194730
          Length = 410

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -1

Query: 478 SAASRRPDCSTARCTSWTRSPDGRST-AGLGCMSCIRSVFQYH---GAGDL 338
           +AA     C+  RC  WT++ +  S   G   + C R +  +H   GAG L
Sbjct: 321 AAAVYTAQCALTRCQQWTKTCELHSRYTGEQLLECSRMMVDFHQKAGAGKL 371


>02_02_0317 + 8893593-8894207
          Length = 204

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 612 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLG 716
           EE  + +E  ERV G R     IRPGG  +  PLG
Sbjct: 168 EEVRERVEEEERVVGRRKREEEIRPGGGWVVGPLG 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,684,082
Number of Sequences: 37544
Number of extensions: 448791
Number of successful extensions: 1241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)