Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0353
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53961| Best HMM Match : Complex1_49kDa (HMM E-Value=0)             159   2e-39
SB_57141| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.94 
SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)                  31   1.2  
SB_42993| Best HMM Match : RnaseH (HMM E-Value=1.3)                    31   1.2  
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)                   30   2.2  
SB_52614| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)                  28   6.6  
SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)                   28   8.8  

>SB_53961| Best HMM Match : Complex1_49kDa (HMM E-Value=0)
          Length = 417

 Score =  159 bits (387), Expect = 2e-39
 Identities = 75/84 (89%), Positives = 77/84 (91%)
 Frame = +1

Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
           PQHPAAHGVLRLVLELDGE V  ADPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM
Sbjct: 91  PQHPAAHGVLRLVLELDGEVVVRADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMM 150

Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
            NEQ YSLAVEKLLNID+P RAK+
Sbjct: 151 TNEQAYSLAVEKLLNIDIPERAKW 174



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 34/41 (82%), Positives = 36/41 (87%)
 Frame = +3

Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMM 632
           R LF EITRLLNHIM V THALDVGA+TPFFW+FEEREK M
Sbjct: 176 RVLFGEITRLLNHIMGVTTHALDVGAMTPFFWMFEEREKDM 216



 Score = 31.5 bits (68), Expect = 0.71
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 122 PDFVKQFEGPVMYPDESTKSL---KPVPYNSIIKPAEKKVRNMILNFGP 259
           P  + +  G VMYPDE++      +P+P        EK V NM +NFGP
Sbjct: 51  PGRLAEMTGTVMYPDENSAKWDIDEPIP--------EKGVTNMTINFGP 91


>SB_57141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +3

Query: 486 CSSAGQVHRTLFAEITRLLNHIMAV-GTHALDVGALTPFFWLF-EERE 623
           CS A  VH  ++++ T  +N+I ++ G+ +++  ++    WLF  ERE
Sbjct: 39  CSDARSVHTRVYSDNTSTVNYIASMGGSQSMECNSIATKIWLFCIERE 86


>SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)
          Length = 604

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 226 ESTQHDPELRPQHPAAHGVLRLVLELDGETVRA 324
           +  Q DPE   Q  AA G+LR  +EL+G T+++
Sbjct: 73  DEKQEDPEKIRQDVAARGILRDKMELEGPTLKS 105


>SB_42993| Best HMM Match : RnaseH (HMM E-Value=1.3)
          Length = 349

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +3

Query: 486 CSSAGQVHRTLFAEITRLLNHIMAV-GTHALDVGALTPFFWLF-EERE 623
           CS A  VH  ++++ T  LN+I ++ G+ +++  ++    W+F  ERE
Sbjct: 156 CSDARSVHIRVYSDNTTTLNYIASMGGSQSIECNSIATKIWIFCIERE 203


>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
          Length = 573

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -1

Query: 535 RVISANRVLCTWPAEEHRCSAASRRPDCSTARCTSWTRSPDGRSTAGLGCMSCIRSVFQY 356
           R + +N + C + A +      +RR   S+  CT      +    AG+ C++ +++  +Y
Sbjct: 445 RRLCSNALNCPYRARDGEKGFCTRRIVKSSTSCTV-----ESDCEAGMTCLTKLKACMKY 499

Query: 355 HGAGDLC 335
              GDLC
Sbjct: 500 RQKGDLC 506


>SB_52614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +3

Query: 342 SPAPWY*KTDRIQD-IHPSPAVLRPSGLRVHDVQRAVLQSGRREAAEHRCSSAGQVHRTL 518
           SP+    +TD     +HPS AV        H+  + ++ SGR    +   S    +H + 
Sbjct: 161 SPSDMAVRTDACGGFLHPSHAVYSAVSANDHNALKNIILSGRVNVNQLNASGVTALHESS 220

Query: 519 FAEITRLLNHIMAVG 563
           +   +R +N ++ +G
Sbjct: 221 YEGKSRCVNVLVQLG 235


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 414  TVEVRQGLGVCLVFDQFFSTTVQETYV-RICCTDCLSVQFQ 295
            T+E+   + + LVFDQF   T+Q  YV  + C  C+   ++
Sbjct: 5118 TLEINHWVQITLVFDQFIG-TLQVYYVDSVACYTCIQTGYR 5157


>SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1627

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 517 RVLCTWPAEEHRCSAASRRPDCSTARCTSWTRSPDG 410
           +V C  P+    C+A    P+C+ A  TS  R P G
Sbjct: 343 QVTCVPPSVTPECNATCVGPNCTMANSTSAVRYPAG 378


>SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -3

Query: 719 QTQRHVKRNPSWSDVGGVHPGAADXXXXXXXXXXXLKQPEEGSERPHVERVRAD 558
           + +RH +R+  W   GG H G  D            ++  E S    V R+ AD
Sbjct: 195 ERERHNERD-EWKRAGGEHRGRRDSNRSSDGDKQHPRRDSEKSTEDRVRRISAD 247


>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 80   NVNSQRDGHRWFPDPDFVKQFEGPVMYPDESTKSLK 187
            N+      HRWF  PDF++  EG   +P + + S++
Sbjct: 1626 NIEELNREHRWFRGPDFLE--EGESEWPKKRSDSIQ 1659


>SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)
          Length = 1562

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 478  SAASRRPDCSTARCTSWTRSPDGRSTAGLGCMSCIRSVFQYHG 350
            +A  R  D  +  C SW +    + +A LGC    +  F++ G
Sbjct: 1227 AAGGRTADQGSTACRSWLQRFALQDSANLGCYPWSKQTFRHEG 1269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,195,959
Number of Sequences: 59808
Number of extensions: 481266
Number of successful extensions: 1411
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)