Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0353
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79601-2|CAB01886.1|  482|Caenorhabditis elegans Hypothetical pr...   153   2e-37
U00043-9|AAC77506.1|  474|Caenorhabditis elegans Temporarily ass...   153   2e-37
Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical ...    29   3.3  
U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.    28   5.8  
U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated p...    28   5.8  

>Z79601-2|CAB01886.1|  482|Caenorhabditis elegans Hypothetical
           protein K09A9.5 protein.
          Length = 482

 Score =  153 bits (370), Expect = 2e-37
 Identities = 70/84 (83%), Positives = 76/84 (90%)
 Frame = +1

Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
           PQHPAAHGVLRLVL+L+GE +  A PHIGLLHR TEKLIE+KTYTQALPYFDRLDYVSMM
Sbjct: 105 PQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQALPYFDRLDYVSMM 164

Query: 436 CNEQCYSLAVEKLLNIDVPLRAKY 507
           CNEQ +SLAVEKLL ID+P RAKY
Sbjct: 165 CNEQAWSLAVEKLLGIDIPTRAKY 188



 Score =  120 bits (289), Expect = 1e-27
 Identities = 51/70 (72%), Positives = 61/70 (87%)
 Frame = +3

Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
           RTL  E+TR+ NHIM + THALDVGA+TPFFW+FEEREK+ EF ERVSGARMHA Y+RPG
Sbjct: 190 RTLMGELTRIQNHIMGITTHALDVGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPG 249

Query: 690 GVSLDMPLGL 719
           GV+ D+P+GL
Sbjct: 250 GVAWDLPIGL 259


>U00043-9|AAC77506.1|  474|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 99 protein.
          Length = 474

 Score =  153 bits (370), Expect = 2e-37
 Identities = 70/87 (80%), Positives = 77/87 (88%)
 Frame = +1

Query: 256 PQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM 435
           PQHPAAHGVLRLVL+L+GE +  A PHIGLLHR TEKLIE+KTYTQALPYFDRLDYVSMM
Sbjct: 97  PQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQALPYFDRLDYVSMM 156

Query: 436 CNEQCYSLAVEKLLNIDVPLRAKYTEL 516
           CNEQ +SLA+EKLL IDVP RAKY  +
Sbjct: 157 CNEQAFSLAIEKLLGIDVPPRAKYIRI 183



 Score =  120 bits (288), Expect = 1e-27
 Identities = 51/70 (72%), Positives = 61/70 (87%)
 Frame = +3

Query: 510 RTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPG 689
           R LF E+TR+ NHIM + THALDVGA+TPFFW+FEEREK+ EF ERVSGARMHA Y+RPG
Sbjct: 182 RILFGELTRIQNHIMGITTHALDVGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPG 241

Query: 690 GVSLDMPLGL 719
           GV+ D+P+GL
Sbjct: 242 GVAWDLPVGL 251


>Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical
           protein R17.3 protein.
          Length = 440

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -1

Query: 457 DCSTARCTSWTRSPDGRSTAGLGCMSCIRSVFQY-HGAGDLCEDL 326
           DC      SWT+      T G+G    +R V Q+    G  CE L
Sbjct: 243 DCVLTDWDSWTQCTADNGTCGIGTQKRLRHVIQHAERGGAACEPL 287


>AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.10 protein.
          Length = 69

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 138 CFTKSGSGNQRCPSLWEF 85
           CF KS SG++ CP  WEF
Sbjct: 29  CFPKSISGSRCCPDGWEF 46


>U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 609 FEEREKMMEFYERVSGARMHAAYIRPGGVSLD 704
           +EE ++  +++ERV  ARM +  ++PGG  L+
Sbjct: 189 YEEIKEGFDYWERVINARMMSDSMKPGGDILE 220


>U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical
           protein C44C1.4a protein.
          Length = 547

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 247 ELRPQHPAAHGVLRLVLELDGETVRAAD 330
           +LRPQHP  H  +  +L+  G + R AD
Sbjct: 400 QLRPQHPKIHQTVSTLLKYGGLSRRPAD 427


>U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated
           protein 8 protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 609 FEEREKMMEFYERVSGARMHAAYIRPGGVSLD 704
           +EE ++  +++ERV  ARM +  ++PGG  L+
Sbjct: 189 YEEIKEGFDYWERVINARMMSDSMKPGGDILE 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,966,285
Number of Sequences: 27780
Number of extensions: 360071
Number of successful extensions: 1081
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)