Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0353
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 197 YNSIIKPAEKKVRNMILNFG 256
           YN +I+P +     + +NFG
Sbjct: 38  YNKLIRPVQNMTEKVHVNFG 57


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 499 PAEEHRCSAASRRPDCSTARC 437
           P ++HR S+AS      T RC
Sbjct: 279 PVKQHRSSSASTTCSGHTVRC 299


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 106 VPISLGVHIMNSGNVL 59
           VPISLG+H  N   VL
Sbjct: 159 VPISLGLHRANEPVVL 174


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = +2

Query: 293 YWNWTERQSVQQI 331
           YWNW+ +  ++ I
Sbjct: 839 YWNWSNQDVIKSI 851


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,937
Number of Sequences: 438
Number of extensions: 4049
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)